PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.16G029700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Dof

Protein Properties

Length: 303aa MW: 33144.6 Da PI: 9.5109

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.16G029700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.9	2.2e-38	29	89	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ +kcprCds ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k+++ Manes.16G029700.1.p 29 QQQPQKCPRCDSLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRAK 89 68999***************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-26	29	87	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.0E-33	31	87	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.835	33	87	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	35	71	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MQQEKGGSEG MMKLDQDRRL KPILGENQQQ QPQKCPRCDS LNTKFCYYNN YSLSQPRYFC 60 KTCRRYWTQG GTLRNVPVGG GCRKGKRAKT SSTSSSSSEI SGSRSQPHSQ SLASSQTTIS 120 PTNLGNNAST LRTKESSVDF AIPPVISSMV PYYSGAGLLT SLSSIRSLHN QPPQSFVLSE 180 PPSLRDELGS GPSNLSLLHG FNIFGSQQIQ QQRQTDHMSN KDTSRDHPFY ASSSQQQNWY 240 PAFVSTTTNP TVSDTALWTF STTTTTTTGI TKSNSTTSAG SFPLNPSDHH EWHNLPGYGP 300 PP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.16G029700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021596585.1	0.0	dof zinc finger protein PBF-like
TrEMBL	A0A2C9U812	0.0	A0A2C9U812_MANES; Uncharacterized protein
STRING	cassava4.1_032748m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4145	32	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	2e-33	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	Manes.16G029700.1.p