PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.16G027000.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | LSD | ||||||||
Protein Properties | Length: 83aa MW: 9062.56 Da PI: 8.6098 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 40.7 | 4e-13 | 6 | 30 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYP GA++V+C++C+ V Manes.16G027000.3.p 6 CGSCRSLLSYPKGARNVQCSSCQMV 30 ***********************98 PP | |||||||
2 | zf-LSD1 | 39.2 | 1.1e-12 | 36 | 55 | 6 | 25 |
zf-LSD1 6 tlLsYPrGApsVRCalCdtV 25 +lL+YP+GA+sVRC++C+++ Manes.16G027000.3.p 36 VLLMYPYGASSVRCSSCHFI 55 79****************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 4.8E-16 | 3 | 33 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.4E-12 | 6 | 30 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.0E-10 | 36 | 55 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 7.4E-9 | 37 | 56 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 83 aa Download sequence Send to blast |
MAQMVCGSCR SLLSYPKGAR NVQCSSCQMV NFVLEVLLMY PYGASSVRCS SCHFITEIGV 60 HNRRPPWSVI QGYPPPSPNP VQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.16G027000.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021598099.1 | 1e-50 | protein LOL2 | ||||
Swissprot | O65426 | 7e-27 | LOL2_ARATH; Protein LOL2 | ||||
TrEMBL | A0A2C9U892 | 4e-53 | A0A2C9U892_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_020122m | 4e-50 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 3e-29 | lsd one like 2 |
Link Out ? help Back to Top | |
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Phytozome | Manes.16G027000.3.p |