PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G024500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Dof
Protein Properties Length: 297aa    MW: 32853.5 Da    PI: 8.6862
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G024500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof110.39.1e-3545102259
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 
                          +++ lkcprCdstntkfCyynny+ sqPr+fCk+C+r+Wt+GG+lrnvP+G+gr++++
  Manes.16G024500.1.p  45 QSEPLKCPRCDSTNTKFCYYNNYNKSQPRHFCKTCKRHWTRGGTLRNVPLGAGRKNKR 102
                          57889***********************************************976554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-2246102IPR003851Zinc finger, Dof-type
PfamPF027011.2E-3048101IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.91649103IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105187IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGLSSKQVSW DGLGWSQTLL QAQTLELPKT PVARRQQQQQ QNHQQSEPLK CPRCDSTNTK  60
FCYYNNYNKS QPRHFCKTCK RHWTRGGTLR NVPLGAGRKN KRLKTCKTTA KATTAAAAAT  120
TSTTSTTTSN AQKQKQNLSL AFGDQKSVSE IICQPMINLP SSALQQSSES CSSSFVCKNF  180
STSNNSVFLG STLSLPQNQG LYFPYSSSST SFDTHPFSIS TSLQSSNLYN YIGEAMEDST  240
ITTPMPITSS TVSTQQWQVP NTSSCMDMTS YWNWDDIDTF VSTDLNIPWN DSELNP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G024500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596924.10.0dof zinc finger protein DOF1.4-like
TrEMBLA0A2C9U9340.0A0A2C9U934_MANES; Uncharacterized protein
STRINGcassava4.1_012902m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51073356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.17e-28Dof family protein