PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.16G021300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | B3 | ||||||||
Protein Properties | Length: 875aa MW: 96056.9 Da PI: 7.6875 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.5 | 1.2e-18 | 332 | 431 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G + +L++gD+v+F++ + Manes.16G021300.1.p 332 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISHPEGLPLKVQDSKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQNMRLQAGDIVTFSRLE 420 89**************************555666777***************9989999999***9.********************766 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 e++lv+++++ Manes.16G021300.1.p 421 -PEGKLVMGFRK 431 .77777777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS01359 | 0 | 41 | 98 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:2.40.330.10 | 9.4E-31 | 328 | 440 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-20 | 329 | 431 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.99E-23 | 330 | 431 | No hit | No description |
PROSITE profile | PS50863 | 11.335 | 332 | 433 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-20 | 332 | 433 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.1E-16 | 332 | 431 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.886 | 557 | 607 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 9.9E-13 | 562 | 604 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 875 aa Download sequence Send to blast |
MSTAPSSSSS SMSKKCFNSD CTDFKSRKGW RLRSGDFAEL CDRCSSAYEE GRFCDTFHLN 60 ATGWRCCESC GKRVHCGCIV SIHAFTLLDA GGIECMACSR KNVLLTSNST WSPSLFYNAP 120 LSERFKDLSV KSWSQLAGSG PVPWRQAPNF FSSCVPHSEL HPRTLYEIDR HNTGERSSAP 180 YLEKGRIEDF SDRLINGGLK LGTRDLRENG NAGKSSDEKP GLCLGISQQP SLKEDPSAPQ 240 LGMALPFASL NESNGQIGGS GTPLRQPAPP LVAKQFHGNG TDSSPDTQIR NGRPRADARG 300 RSQLLPRYWP RFTDEELQQI SGNSNSVITP LFEKMLSASD AGRIGRLVLP KKCAEAYFPP 360 ISHPEGLPLK VQDSKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQNMRLQA GDIVTFSRLE 420 PEGKLVMGFR KASTAPSSDQ DNDTSKTNGV PTNGDVEMAD PSPWSKVDKS GYIAKEVLEA 480 KSSKKRKSST LGSKSKRLRI ENEDVIELKL TWEEAQGLLR PPPDLVPSVV VIEGFEFEEY 540 EDAPVLGKPT IFATDNLGQK FQWVQCEDCF KWRKLPANAL LHSKWTCSGN TWDPERSSCS 600 AAQELTAEQL EDLLPSCNLA ASKKMKAAKQ EADNVEAMEG LDTLANLAIL GENEALTTSS 660 QATTKHPRHR PGCSCIVCIQ PPSGKGPKHK QTCTCNVCQT VKRRFKTLMM KREKKQSEKE 720 AESTKKRQQQ TLPEKYLDDD PSPSTNTGSS SPNKKKVVSE GSDDDPNKIK SSTSPFKGQI 780 DLNIQPEREE ELSPGSDSGS MMKMIQDATD RYLRQQRLNS DGDNISAGNQ TLACHEIGEK 840 VSNGILLGSS HQDSDKGHPA TFSVEVSASS PAAG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5yzy_C | 1e-64 | 310 | 435 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5yzz_C | 1e-64 | 310 | 435 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_C | 1e-64 | 310 | 435 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_G | 1e-64 | 310 | 435 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_K | 1e-64 | 310 | 435 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_M | 1e-64 | 310 | 435 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
6j9a_A | 1e-64 | 310 | 435 | 2 | 127 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.16G021300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021597030.1 | 0.0 | B3 domain-containing protein Os07g0563300-like isoform X2 | ||||
Swissprot | Q0D5G4 | 0.0 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A2C9U7T5 | 0.0 | A0A2C9U7T5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_001573m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7738 | 31 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 1e-180 | high-level expression of sugar-inducible gene 2 |
Link Out ? help Back to Top | |
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Phytozome | Manes.16G021300.1.p |