PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G016900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GeBP
Protein Properties Length: 399aa    MW: 44080.9 Da    PI: 5.4924
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G016900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573121.15.5e-38170266298
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                          lfqrlwse+Dei++L+G+idf++k+g++ps+d++ f++f+kks++f+vs sql +K+ rLKkKf+++v+k k+g++++fsk+hdqk+f+l
  Manes.16G016900.1.p 170 LFQRLWSEDDEIAVLKGIIDFTEKKGTDPSKDMTSFHDFIKKSLHFDVSLSQLKDKVWRLKKKFENHVSKGKKGEDKTFSKAHDQKSFDL 259
                          79**************************************************************************************** PP

               DUF573  92 skkiWgs 98 
                          skkiWgs
  Manes.16G016900.1.p 260 SKKIWGS 266
                          *****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.8E-35171265IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MAPKRSTPLD DPPAASSEEE EESSSGEEED GEEEEGSSSE EEGTQGKPQK PSSQPASQIQ  60
TAKPVHKKPD SESESDESDS ESDSDADRPN HARDATVKPI ASKPMEETPT KTTKLRSKPS  120
ASSSATAKST AAVKRASESD RDPKDSKRGK KKDSESDGVV EKSEDTKKQL FQRLWSEDDE  180
IAVLKGIIDF TEKKGTDPSK DMTSFHDFIK KSLHFDVSLS QLKDKVWRLK KKFENHVSKG  240
KKGEDKTFSK AHDQKSFDLS KKIWGSEAIS GGGVDLGVKS NGKAKKNGGN NQRSKSFATL  300
KAELGLDVEE TEKVDKMEVE TESHSSLKQI LQFDRTVSVA GMEECVVKRG LDMLEGAKKA  360
EMEEKWRQLH VAELELFLKR NELIREQAKL MLAAYKTE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G016900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021597187.10.0GLABROUS1 enhancer-binding protein-like
TrEMBLA0A2C9U8V90.0A0A2C9U8V9_MANES; Uncharacterized protein
STRINGcassava4.1_009085m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.12e-34DNA-binding storekeeper protein-related transcriptional regulator