PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.16G005500.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

G2-like

Protein Properties

Length: 283aa MW: 32388.9 Da PI: 9.6149

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.16G005500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103	1.8e-32	55	107	2	54
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prlrWtpeLH++Fv+av++LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR Manes.16G005500.1.p 55 PRLRWTPELHHCFVRAVQSLGGEHRATPKMVLQIMNVKGLTMSHVKSHLQMYR 107 8**************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-30	51	109	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.351	51	111	IPR017930	Myb domain
SuperFamily	SSF46689	5.02E-15	53	108	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.4E-24	55	107	IPR006447	Myb domain, plants
Pfam	PF00249	3.2E-8	56	107	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
YPSSFHDNSD SAFKSPCDDD DVRVSRTPSA DHSLSPGALS LKSSMVRPYV RSKMPRLRWT 60 PELHHCFVRA VQSLGGEHRA TPKMVLQIMN VKGLTMSHVK SHLQMYRGMK HEQTMQAKKK 120 HEAPGIRYST YFSHLDSMFF NQNHNQLGDK RFNNNLLPYQ GQGAHNNLSY KLSPSNTTQR 180 KENQEMWMGK RLLTTDTFSH EEETSKKWEK KPEYPCITLK DILLKSCTAQ RNNEQDLTQI 240 AQRVEGDKMT LLLNSKASES VLKLRKAEKL CMDDVCLELS LG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-19	56	111	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-19	56	111	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-19	56	111	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-19	56	111	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-19	56	111	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-19	56	111	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-19	56	111	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-19	56	111	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.16G005500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021597634.1	0.0	uncharacterized protein LOC110603936
TrEMBL	A0A2C9U7A3	0.0	A0A2C9U7A3_MANES; Uncharacterized protein (Fragment)
STRING	cassava4.1_025779m	1e-133	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9381	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	1e-32	G2-like family protein

Link Out ? help Back to Top
Phytozome	Manes.16G005500.1.p