PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.15G190500.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

M-type_MADS

Protein Properties

Length: 351aa MW: 40231.4 Da PI: 9.9449

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.15G190500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	30.6	4.3e-10	11	52	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i +s r tf kR++ +lKK + +LC++e+++ii+ ++ Manes.15G190500.1.p 11 IRKESTRMNTFQKRKKSLLKKISKFLILCGVEACLIILVPKE 52 67789999*****************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.27E-13	1	86	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.8E-6	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.311	1	53	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.2E-11	11	52	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MGHSRIKMEL IRKESTRMNT FQKRKKSLLK KISKFLILCG VEACLIILVP KEKDERVIKV 60 EATWPSNPDK IKRIINKYKK TDQKKKKVDM EISKLNKQIY EANFPLWDVR LDGFLEDQLR 120 VLIAQLDKKI EVADRKLDRF QENQILMDEF AMRMLYGSQI MENYMNRSNS VRNFSNFHQL 180 FSDVMPLPVN CFLPGQSSYL IPSNSNNSNL QIFSDYQTTS LSRKLMDRNS NSSNLANLQL 240 QLFSDPKPLG VQLQMHSQQI QTSPGTSTSP SFLEDLTMMA KDQYTGNQCG VRTISNVPSF 300 PSLSYLNPSP LMWDNVMFNN ADASFGNVGS ALQTILSRMQ LPMSSMSSYQ *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MGHSRIKMEL IRKESTRMNT FQKRKKSLLK KISKFLILCG VEACLIILVP KEKDERVIKV  60
EATWPSNPDK IKRIINKYKK TDQKKKKVDM EISKLNKQIY EANFPLWDVR LDGFLEDQLR  120
VLIAQLDKKI EVADRKLDRF QENQILMDEF AMRMLYGSQI MENYMNRSNS VRNFSNFHQL  180
FSDVMPLPVN CFLPGQSSYL IPSNSNNSNL QIFSDYQTTS LSRKLMDRNS NSSNLANLQL  240
QLFSDPKPLG VQLQMHSQQI QTSPGTSTSP SFLEDLTMMA KDQYTGNQCG VRTISNVPSF  300
PSLSYLNPSP LMWDNVMFNN ADASFGNVGS ALQTILSRMQ LPMSSMSSYQ *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.15G190500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021595856.1	0.0	agamous-like MADS-box protein AGL82
TrEMBL	A0A2C9UHL4	0.0	A0A2C9UHL4_MANES; Uncharacterized protein
STRING	cassava4.1_033475m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF534	31	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	3e-11	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Manes.15G190500.1.p