PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.15G185500.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

G2-like

Protein Properties

Length: 374aa MW: 42513.2 Da PI: 9.096

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.15G185500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.2	3.4e-32	195	248	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Manes.15G185500.1.p 195 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 248 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.97E-15	192	248	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-28	193	248	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.7E-24	195	248	IPR006447	Myb domain, plants
Pfam	PF00249	6.4E-7	196	247	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MELFPAQLDL SLQIRPPNSK PTTAWRRTEE EMDLGFWKRA LDSRNTTSSM EKPDTYFELS 60 LSNPRVSESK SNHFDLHQNT SSYNDNNLFR SFQKNQYQHQ LHHHHHNPVF HQQQQQQGQS 120 QELGFLRPIR GIPIYQNPPP PLSFSQQHLD STGSQNSSLV TNNSSSSNFS PYKSPGLMRS 180 RLMSRFPAKR SMRAPRMRWT STLHARFVHA VELLGGHERA TPKSVLELMD VKDLTLAHVK 240 SHLQMYRTVK TTDQAAASSG QSDVIDNVSS GDTSEDLMFD IQNSRPEMQQ GRPSGHQENK 300 NFHGFWSNNS SSREAACLHV KSKDSGENLP CPEPKDMDPK CLSHERISDV SSSTLSWTNP 360 KKPNLEFTLG RPH*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MELFPAQLDL SLQIRPPNSK PTTAWRRTEE EMDLGFWKRA LDSRNTTSSM EKPDTYFELS  60
LSNPRVSESK SNHFDLHQNT SSYNDNNLFR SFQKNQYQHQ LHHHHHNPVF HQQQQQQGQS  120
QELGFLRPIR GIPIYQNPPP PLSFSQQHLD STGSQNSSLV TNNSSSSNFS PYKSPGLMRS  180
RLMSRFPAKR SMRAPRMRWT STLHARFVHA VELLGGHERA TPKSVLELMD VKDLTLAHVK  240
SHLQMYRTVK TTDQAAASSG QSDVIDNVSS GDTSEDLMFD IQNSRPEMQQ GRPSGHQENK  300
NFHGFWSNNS SSREAACLHV KSKDSGENLP CPEPKDMDPK CLSHERISDV SSSTLSWTNP  360
KKPNLEFTLG RPH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	196	250	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	196	250	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	196	250	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	196	250	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	196	250	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	196	250	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	196	250	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	196	250	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.15G185500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021593728.1	0.0	probable transcription factor KAN2 isoform X1
Swissprot	Q9C616	2e-87	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A2C9UIC5	0.0	A0A2C9UIC5_MANES; Uncharacterized protein
STRING	cassava4.1_023629m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5968	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	4e-69	G2-like family protein

Link Out ? help Back to Top
Phytozome	Manes.15G185500.1.p

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]