PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G173500.10.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARR-B
Protein Properties Length: 541aa    MW: 59917.6 Da    PI: 5.8028
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G173500.10.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.37.2e-28313366256
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                            +++WtpeLH++Fv+aveqL G+++A+P++il++mkv+gLt+++v+SHLQkYR++
  Manes.15G173500.10.p 313 IKVDWTPELHKKFVQAVEQL-GIDQAIPSRILDVMKVEGLTRHNVASHLQKYRMH 366
                           5899****************.********************************96 PP
2Response_reg31.11.2e-11201261109
                           EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS
          Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 
                           vl+ +++ + +  +++ le  +y +v  + +  eal  + +k   +++ ++ ++m++++  e +k +++++ +lp i+++     +++ 
  Manes.15G173500.10.p  20 VLLLEEDSSSAAEIKSKLEATDY-IVSLFCNENEALSAISNKPesFHVAIVEVSMSNSN--ERFKFLETAK-DLPTIMISNVHCLSTMM 104
                           78899999999999*********.***************888778***********976..6777777766.9*******9999***** PP

                           HHHHTTESEEEESS--HHHHHH CS
          Response_reg  88 ealkaGakdflsKpfdpeelvk 109
                           +++ +Ga +fl Kp ++++l++
  Manes.15G173500.10.p 105 KCIALGAVEFLCKPLSEDKLRD 126
                           *******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23008.5E-1616139No hitNo description
SuperFamilySSF521725.41E-1516134IPR011006CheY-like superfamily
SMARTSM004480.003418128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011022.07519132IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.0E-820126IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.61E-921131No hitNo description
PROSITE profilePS5129415.08309368IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-27310369IPR009057Homeodomain-like
SuperFamilySSF466895.64E-18311369IPR009057Homeodomain-like
TIGRFAMsTIGR015578.6E-25312366IPR006447Myb domain, plants
PfamPF002491.4E-7315364IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MVCTANYLSA WKDFPKGLRV LLLEEDSSSA AEIKSKLEAT DYIVSLFCNE NEALSAISNK  60
PESFHVAIVE VSMSNSNERF KFLETAKDLP TIMISNVHCL STMMKCIALG AVEFLCKPLS  120
EDKLRDIWQH VVHKAFNAGG SVLSESLKPV KDSVVSMLQL GVETEEPNND RIENASPAHE  180
NELEQSSGSD KYPAPSTPQL KQGARLLDDG DCQELTNCST EKENEEQEGE SKSVETTCAM  240
IEVTPQGHDT QSLTETVIKG EDDSAAGVKV ENNQSGHLQN NENLNNPEGN AENPVKGSSL  300
PNLDGTRANR KKIKVDWTPE LHKKFVQAVE QLGIDQAIPS RILDVMKVEG LTRHNVASHL  360
QKYRMHRRHI LPKEDDRRLD QARRSYFQPR PIMAYPPCHT NHTFPLSPAY PVWGAPGGPP  420
AGVQMWGSPG YSPWPPRENW HWKPYPVMMH ADVWGCPVMP PPLNPYSSPP LAEEVVDKVV  480
KEAINNPWLP LPIGLKPPST DSVLAELSRQ GISTIPPHIN GSNPTKRMGP HCRHEDNTNS  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-16317366655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G173500.10.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595906.10.0two-component response regulator-like APRR2
RefseqXP_021595907.10.0two-component response regulator-like APRR2
SwissprotQ6LA431e-143APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A251J7430.0A0A251J743_MANES; Uncharacterized protein
STRINGcassava4.1_004881m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.51e-124ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]