PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G161100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family M-type_MADS
Protein Properties Length: 380aa    MW: 43647.8 Da    PI: 8.8456
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G161100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.72e-151153345
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         i  +s r  tf kR++ +lKK +E S+LC++e+++iif++++k
  Manes.15G161100.1.p 11 IRKESTRMNTFQKRKKSLLKKISEFSILCGVEACLIIFGPKQK 53
                         67789999********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.385153IPR002100Transcription factor, MADS-box
SMARTSM004326.1E-13160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.07E-17294IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-8323IPR002100Transcription factor, MADS-box
CDDcd001201.03E-17553No hitNo description
PfamPF003191.0E-151153IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGHSRIKMEL IRKESTRMNT FQKRKKSLLK KISEFSILCG VEACLIIFGP KQKDEQVIKL  60
EATWPSNPDE IKRIINKYKK TDQARRCYQV SDYFADKKKK VDMEISKLHK QIYEVPLWDV  120
RLDGFLEDQL QVLIAQLDKK IEVADRKLDR FQENQILMDE FATRMLYSSQ IMENYMNRSN  180
SVRNFSNFHH LFSDVMPLPV NCFLPGQSSY MIPSNSNLQI FSDYQTSMSI KLMDRNSYSS  240
NLANLQLQPF SDPKPLGVQL QMHSQQIQSS PGTATSPNFL EDLTTMAKDQ YTGNQYGVRT  300
NSNVPSFPSL SYLNPSPLMW DNVTFNNADA SSGNIGSSLQ TILPRMQLPM SSFSDQMSHC  360
QEDNFSSNIG SGKIERIWK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G161100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595856.10.0agamous-like MADS-box protein AGL82
TrEMBLA0A2C9UGQ90.0A0A2C9UGQ9_MANES; Uncharacterized protein
STRINGcassava4.1_025079m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-23M-type_MADS family protein