PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G145300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 368aa    MW: 42180.9 Da    PI: 5.1167
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G145300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.57.3e-1132116396
                          EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                          kv     + + + l lp kfa+++g +   s   +l  ++g  Wev l  + k+++++l +GW+e v+   ++ g f+ F + g s+f  
  Manes.15G145300.1.p  32 KVR--TTTIEDKKLNLPLKFARKFGDE--LSDVAKLIVPNGLIWEVGL--T-KGETIWLDNGWQELVEYYSVCNGWFLQFNYLGMSNF-- 112
                          444..455666779**********865..7889***************..5.55799*************************998888.. PP

                          EEEE CS
                   B3  93 vvkv 96 
                          ++ +
  Manes.15G145300.1.p 113 NIFI 116
                          5555 PP
2B341.23e-13276362997
                          HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          ++ ++++l +p  fa ++  +   s t+++ed  g +W +   ++ ++g+  vl++G +eF ++n+++ gD+++F+l+++++  l+v vf
  Manes.15G145300.1.p 276 SYIRTNLLHVPSAFAVKYLRN--ISETIKVEDCYGGEWIIHT-FCSCRGWsLVLRGGGEEFFSDNDMQNGDVCLFELIQERDVVLKVLVF 362
                          5667889***********655..6779************999.77777778***************************998888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-1325127IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-1427119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.15128120IPR003340B3 DNA binding domain
SMARTSM010191.6E-529120IPR003340B3 DNA binding domain
CDDcd100174.38E-829118No hitNo description
Gene3DG3DSA:2.40.330.103.5E-17261363IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-16263363IPR015300DNA-binding pseudobarrel domain
CDDcd100174.71E-12267362No hitNo description
PROSITE profilePS508639.925268365IPR003340B3 DNA binding domain
SMARTSM010196.3E-5269365IPR003340B3 DNA binding domain
PfamPF023622.3E-11274362IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MAPRPSMGSC ERPCCRQATT GVERSWRSFF IKVRTTTIED KKLNLPLKFA RKFGDELSDV  60
AKLIVPNGLI WEVGLTKGET IWLDNGWQEL VEYYSVCNGW FLQFNYLGMS NFNIFIFDET  120
VFEIGYPCIQ PRRKQEPSNM RNQTPFNEDE IEEDDDDFVD MFGSTPRPSS SKGTNSKKRD  180
YLGFNKRFKN PASAEKRKLK QDYQGKGKNC KIEDLEENDS DQDGIDLSPE CEAKIFISNK  240
FYVTLEKIYP GSKKAVDAAM ECKPQNPAFL VILGKSYIRT NLLHVPSAFA VKYLRNISET  300
IKVEDCYGGE WIIHTFCSCR GWSLVLRGGG EEFFSDNDMQ NGDVCLFELI QERDVVLKVL  360
VFHAYLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1525336433142B3 domain-containing transcription factor VRN1
4i1k_B3e-1525336433142B3 domain-containing transcription factor VRN1
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G145300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595596.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2C9UH240.0A0A2C9UH24_MANES; Uncharacterized protein
STRINGcassava4.1_023815m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-45B3 family protein