PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G145200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 415aa    MW: 47579.5 Da    PI: 8.2118
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G145200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.5e-1625112598
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          l+ ++ l+ + l++p kf++++g +   s   tl+ ++gr W v+l  +k +++ ++ +GW eFv+   +++g f+vF++ g+s+f  +v
  Manes.15G145200.1.p  25 LMIASILQDKKLRIPGKFVKKYGDE--LSSIATLTVPNGRIWLVEL--EKVDKKLWFHNGWHEFVEHYSIRVGYFLVFRYGGESNF--NV 108
                          44455666677***********865..7779***************..********************************999999..99 PP

                          EEE- CS
                   B3  95 kvfr 98 
                           +f+
  Manes.15G145200.1.p 109 YIFD 112
                          8886 PP
2B360.62.6e-19302394198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+ +l +s+v +  +l +p +fa+++  +++    ++l+ ++g++W v++    ++g+  l+kGW eFv +n+L+egD+++F+l++  + 
  Manes.15G145200.1.p 302 FKVILRSSYVYRGFLLHIPSSFARKYLTVTAF---IRLQVSDGKQWPVRC--VSGKGGAKLSKGWTEFVWENNLEEGDVCIFELINMIDI 386
                          5556778899999999**********877655...***************..88888999***********************9987666 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                           l+v+vfr
  Manes.15G145200.1.p 387 VLKVTVFR 394
                          67777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.28E-2317112IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-2418112IPR015300DNA-binding pseudobarrel domain
CDDcd100172.26E-1921112No hitNo description
PROSITE profilePS5086313.29621114IPR003340B3 DNA binding domain
SMARTSM010191.4E-1522114IPR003340B3 DNA binding domain
PfamPF023621.3E-1325112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-23294394IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-23297397IPR015300DNA-binding pseudobarrel domain
CDDcd100177.38E-22300394No hitNo description
PfamPF023621.4E-17302394IPR003340B3 DNA binding domain
PROSITE profilePS5086313.733302396IPR003340B3 DNA binding domain
SMARTSM010192.4E-15302396IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MSQAVGPDVS DSPATGSNSC MFYKLMIASI LQDKKLRIPG KFVKKYGDEL SSIATLTVPN  60
GRIWLVELEK VDKKLWFHNG WHEFVEHYSI RVGYFLVFRY GGESNFNVYI FDLAVSEISY  120
PCNIPGSLQE PCHDNHYLVA HKKHVVHNDL LEILGSGPPC HTPISPRSKF FDKYVHCNCT  180
INENYDTSRE KLILRKDIYD MEENFQSSQH VGLQFNDIEP IRTPDKVVLP VSDEAEGRNR  240
RRKQKTDPIE HEPIIKQEAD EIPVGANVAS ETFTRRWRTV TPEEKQRTVN AADKFKSDNP  300
FFKVILRSSY VYRGFLLHIP SSFARKYLTV TAFIRLQVSD GKQWPVRCVS GKGGAKLSKG  360
WTEFVWENNL EEGDVCIFEL INMIDIVLKV TVFRVLQDAV PVNLLPNRIM HKIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A7e-4427139518142B3 domain-containing transcription factor VRN1
4i1k_B7e-4427139518142B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G145200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593912.10.0B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLA0A2C9UFZ20.0A0A2C9UFZ2_MANES; Uncharacterized protein
STRINGcassava4.1_033218m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-88B3 family protein