PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.15G145000.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Protein Properties

Length: 296aa MW: 33645.2 Da PI: 9.3128

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.15G145000.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.8	7.9e-13	12	96	8	98
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++ + + l++p +f++++g++ s ++ + g +W v l k ++++++ +GW+eF ++ +++g f+vF+++g+ f +v++f+ Manes.15G145000.2.p 12 ANTIRDKKLRIPDNFVKKFGND--LSAFGRISVPGGPVWPVGL--IKADDKFWFHEGWQEFMESYSIRVGYFLVFRYEGHAVF--TVHIFN 96 56677888*********877..677788999******..9*****************************998888..888885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.43E-20	3	97	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.7E-20	3	98	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.45E-17	4	96	No hit	No description
PROSITE profile	PS50863	12.435	5	98	IPR003340	B3 DNA binding domain
SMART	SM01019	3.0E-11	6	98	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.7E-10	12	96	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MPRPYFYKLI LANTIRDKKL RIPDNFVKKF GNDLSAFGRI SVPGGPVWPV GLIKADDKFW 60 FHEGWQEFME SYSIRVGYFL VFRYEGHAVF TVHIFNLSAS EISYQSNSLS GRRYLAFEEM 120 EDDDLIEYLS SSSPFLVPNS LKRNLHSSKG ASISHATNQD ARDVGVQFNA IEQKNYKDDV 180 KFYNPDGEIQ KPKKPGRKRK NDPNEMQPAA LQGDEVEMRF RFYQSASARK RTVTAEERER 240 AINAAKAFEP INPFCRVVLR PSYLYRGCIM GLLNSSFVMG SNGLSDAFIG EAGLN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4i1k_A	1e-23	221	272	15	66	B3 domain-containing transcription factor VRN1
4i1k_B	1e-23	221	272	15	66	B3 domain-containing transcription factor VRN1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269\|PubMed:12114624}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.15G145000.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021595600.1	0.0	B3 domain-containing transcription factor VRN1-like isoform X3
Swissprot	Q8L3W1	2e-85	VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBL	A0A2C9UG89	0.0	A0A2C9UG89_MANES; Uncharacterized protein
STRING	cassava4.1_006855m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-87	B3 family protein

Link Out ? help Back to Top
Phytozome	Manes.15G145000.2.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525] Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana. Plant Cell Rep., 2018. 37(6): p. 901-912 [PMID:29541883]