PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.15G145000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | B3 | ||||||||
Protein Properties | Length: 360aa MW: 41485.3 Da PI: 9.5276 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.3 | 1.1e-12 | 12 | 96 | 8 | 98 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++ + + l++p +f++++g++ s ++ + g +W v l k ++++++ +GW+eF ++ +++g f+vF+++g+ f +v++f+ Manes.15G145000.1.p 12 ANTIRDKKLRIPDNFVKKFGND--LSAFGRISVPGGPVWPVGL--IKADDKFWFHEGWQEFMESYSIRVGYFLVFRYEGHAVF--TVHIFN 96 56677888***********877..677788999**********..9*******************************998888..888885 PP | |||||||
2 | B3 | 56.6 | 4.7e-18 | 258 | 348 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 vl ps+ + ++++lp fae++ +g++ ++l+ +g++W+v++ yr+++ l++GW eF +n+L egD+++F+l+++++ l Manes.15G145000.1.p 258 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQFCDGKQWSVRCLYRGGR--AKLSQGWYEFTLENNLGEGDVCIFELMRSRDIVL 342 78899******************876743...49999999********665555..66*************************9999999 PP EEEEE- CS B3 93 vvkvfr 98 +v+vfr Manes.15G145000.1.p 343 KVTVFR 348 999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-20 | 3 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-20 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.67E-16 | 4 | 96 | No hit | No description |
PROSITE profile | PS50863 | 12.435 | 5 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.0E-11 | 6 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.4E-10 | 12 | 96 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.9E-23 | 247 | 348 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-23 | 249 | 348 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.69E-21 | 253 | 348 | No hit | No description |
PROSITE profile | PS50863 | 13.338 | 255 | 350 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-17 | 255 | 350 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-16 | 258 | 348 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MPRPYFYKLI LANTIRDKKL RIPDNFVKKF GNDLSAFGRI SVPGGPVWPV GLIKADDKFW 60 FHEGWQEFME SYSIRVGYFL VFRYEGHAVF TVHIFNLSAS EISYQSNSLS GRRYLAFEEM 120 EDDDLIEYLS SSSPFLVPNS LKRNLHSSKG ASISHATNQD ARDVGVQFNA IEQKNYKDDV 180 KFYNPDGEIQ KPKKPGRKRK NDPNEMQPAA LQGDEVEMRF RFYQSASARK RTVTAEERER 240 AINAAKAFEP INPFCRVVLR PSYLYRGCIM YLPSCFAEKN LNGVSGFIKL QFCDGKQWSV 300 RCLYRGGRAK LSQGWYEFTL ENNLGEGDVC IFELMRSRDI VLKVTVFRVL ENARHMNRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-72 | 221 | 351 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-72 | 221 | 351 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.15G145000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021595599.1 | 0.0 | B3 domain-containing transcription factor VRN1-like isoform X2 | ||||
Swissprot | Q8L3W1 | 1e-135 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A2C9UG38 | 0.0 | A0A2C9UG38_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_006855m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-138 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.15G145000.1.p |
Publications ? help Back to Top | |||
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