PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G141400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 557aa    MW: 59790.2 Da    PI: 9.5635
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G141400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-056688123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C+ C+k F r  nL+ H r H
  Manes.15G141400.1.p 66 FICEVCNKGFQREQNLQLHRRGH 88
                         89*******************88 PP
2zf-C2H213.20.00026142164123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k++  +s+ k H +t+
  Manes.15G141400.1.p 142 WKCEKCSKRYAVQSDWKAHSKTC 164
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.1E-66588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.71E-76588No hitNo description
PfamPF121712.7E-56688IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.996688IPR007087Zinc finger, C2H2
SMARTSM003550.00526688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355130107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-5130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.71E-7137162No hitNo description
SMARTSM00355130142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MAAASSSASF FRSREENQNQ MMQQNSSTAA PTTVPQKKKR NQPGTPNPDA EVIALSPKTL  60
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKTTK EVKRKVYLCP EPTCVHHDPS  120
RALGDLTGIK KHYSRKHGEK KWKCEKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  180
DSFITHRAFC DALAQESARH PSNLSTIGTH LYGSNHMSLG LSQVGSQISS LQDQNHPTSN  240
MLRLGSAGAA KFEHIIPPSN SSSLPSMPSS AFFMSDANQG SFPNKSLHGL IQLNDLQNTT  300
TNSSHTNLFN LGFFSNNAAA PSRMSNSDNA NSSTTATNLV NSSFLNPNPF NNGNGGQGLF  360
SNNMGDHHVD SAGIPSLYSN SMQQENITPH MSATALLQKA AQMGSTTSSN NSNLLRGLGG  420
SPSTGTKSDR SPLVSANFSS NSFGNATVGD GGLGTQIEHD NQLQGLMNSL ANGGSSIFGG  480
GHGQDNSFGG FTGSGISLEQ LHNSTNFSNV EEAKLQQSLG VGSDKLTLDF LGVGEMVRSI  540
GGAQHGINLS SNNKPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34138202367Zinc finger protein JACKDAW
5b3h_F1e-34138202367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G141400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595506.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_021595507.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_021595508.10.0protein indeterminate-domain 5, chloroplastic-like
SwissprotQ9ZUL31e-140IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A251J6630.0A0A251J663_MANES; Uncharacterized protein
STRINGcassava4.1_006206m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-130indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]