PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G139200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 420aa    MW: 46597.4 Da    PI: 8.3257
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G139200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.8e-065678123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C++C++ F r  nL+ H r+H
  Manes.15G139200.1.p 56 YVCEICNQGFQRDQNLQMHRRRH 78
                         9*********************9 PP
2zf-C2H216.23.1e-05133155123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k +  +s++k H++t+
  Manes.15G139200.1.p 133 WVCEKCSKGYAVQSDYKAHLKTC 155
                          58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.6E-55379No hitNo description
Gene3DG3DSA:3.30.160.601.7E-55578IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00525678IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.975678IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
SMARTSM0035517097127IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.3E-4124154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035560133160IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009590Biological Processdetection of gravity
GO:0009959Biological Processnegative gravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010031Biological Processcircumnutation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MLDNTTSSLP SPSSDPFPAF DNGVANKRKR KPAGTPDPDA EVVSLSPRTL LESDRYVCEI  60
CNQGFQRDQN LQMHRRRHKV PWKLLKRETQ EVKKRVYVCP EPSCLHHDPC HALGDLVGIK  120
KHFRRKHSNH KQWVCEKCSK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA  180
CTVRRPQPEL QALQPACSSR TASSTSPSSD GNFNIAPLPG LPPKPAEPVF LYSASDRNDA  240
STSSRQEHNL ELQLLPSSIT RLSQNADDPT NLKLSIGSSG RSEKNESNQL SLEASREKSG  300
GDPTLEVAKL KEFANEQMKL AMAEKSYAEE ARQQAKRQLE MAELEFANAK RIRQQAQAEL  360
EKAQVLREQA TKKISSTIMQ ITCQACKQQF QAPAVAAQAD ETSLAMSYMS SATTEGEGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-18131181555Zinc finger protein JACKDAW
5b3h_F4e-18131181555Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00254DAPTransfer from AT2G01940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G139200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593334.10.0protein SHOOT GRAVITROPISM 5-like
SwissprotF4IPE31e-170IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A2C9UG080.0A0A2C9UG08_MANES; Uncharacterized protein
STRINGcassava4.1_008460m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-152indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]