PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G136500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HSF
Protein Properties Length: 361aa    MW: 41637.9 Da    PI: 4.3376
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G136500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind97.91e-301859102
                          HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
         HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                          +++de+++++isws++++sf+++d++ef+ ++LpkyFkhsn +SF+RQLn+YgF+k+++++         weF+++ F +++k+ll++i 
  Manes.15G136500.1.p   1 MVDDESTDSIISWSQSNDSFIIWDMTEFSIRLLPKYFKHSNSSSFIRQLNIYGFRKIDTDR---------WEFANDGFIRDQKQLLKNIS 81 
                          899*******************************************************999.........******************** PP

                          XXXX CS
         HSF_DNA-bind  99 rkks 102
                          r+k+
  Manes.15G136500.1.p  82 RRKH 85 
                          *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.12E-29183IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-26183IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004151.5E-41183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.7E-31183IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.0E-93244IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403357IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-94557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MVDDESTDSI ISWSQSNDSF IIWDMTEFSI RLLPKYFKHS NSSSFIRQLN IYGFRKIDTD  60
RWEFANDGFI RDQKQLLKNI SRRKHPQVTD NRKALPLQDS LVEPCETTEN EGLWKEIEIL  120
KTDKNALMQE LIKLRQLQEN ADNKLLLLRD RIQGMEKNQQ QMLSFLVMVM QNPGFLVQLL  180
HPKENNWRMA EPGSIVEQGA DEEQLAYDGM IIRYQPPQMN EVATPMVSGE PEESNPFSDG  240
TKDSFLSPDF MKLLMDENLS SFENHIPFIP PELYDDGAWE KLLLASPFLQ NVEDTKQDAE  300
RPTDTENEIG AAVNGTLVEQ MEIAESTGFL IEEIDKPKSL EYKINNRPHS EKSEKLETLT  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-2118336129Heat shock factor protein 1
5d5v_B1e-2118336129Heat shock factor protein 1
5d5v_D1e-2118336129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G136500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595541.10.0heat stress transcription factor A-8 isoform X1
RefseqXP_021595542.10.0heat stress transcription factor A-8 isoform X2
SwissprotQ9S7U51e-101HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLA0A251J6520.0A0A251J652_MANES; Uncharacterized protein
STRINGcassava4.1_009665m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104192937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-103heat shock transcription factor A8