PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G123800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family TCP
Protein Properties Length: 482aa    MW: 52167.1 Da    PI: 8.1904
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G123800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.22.1e-36872432133
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssss 69 
                           g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el+++                          
  Manes.15G123800.1.p  87 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAADAINELPSLngsfpdtpkqlsdekrtsdgpeR--- 173
                          689*************************************************************87665444433333322211110... PP

                  TCP  70 aseceaesssssasnsssg....................kaaksaakskksqksaasalnlak....esrakarararertrekmrik 133
                                            g                     + +++++s+ s++s+ s l+l++      ra+ar rarer ++++ ++
  Manes.15G123800.1.p 174 ------------------GpdsadveledpnfnpnqnqrLSLSKSTCSSASDTSKGSGLSLSRsdirVNRAEARGRARERAAKEKEKD 243
                          ..................1223333333333334444446666666777777777777777775344566999999999666555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.6E-4288241IPR005333Transcription factor, TCP
PROSITE profilePS5136931.84189147IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.155222240IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MEVEEIQTQP CKFSRVGNGR NDNSRIGQKG SGEHQYPDDE EDGERKRPNL GSGSISGASG  60
AGGDAGSANR LRGWHHSSRI IRVSRASGGK DRHSKVWTSK GLRDRRVRLS VTTAIQFYDL  120
QDRLGYDQPS KAVEWLIKAA ADAINELPSL NGSFPDTPKQ LSDEKRTSDG PERGPDSADV  180
ELEDPNFNPN QNQRLSLSKS TCSSASDTSK GSGLSLSRSD IRVNRAEARG RARERAAKEK  240
EKDKESLIAH HQNMNPISQS STFTELLTAG ISSVRNNNSN NDGATTTSPS GSEANLFHNK  300
AVPARQWPLT PMDYFGTELL GPSSSRTTHH PSGFSGQIQL GNSIPQAMSM SIPPFHFTGE  360
HHQEQLQHFP FLSDHLIPVA TTQSGPGGDY NLNFTISSGL AGFNRGTLQS NSSSPSLLPH  420
LQRYSSSPLD GSTNVPFFIG AVGPPPPQLE HHHQHQFPPP GSQLCYGDGS RHSDQKGKGK  480
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-2494148155Putative transcription factor PCF6
5zkt_B5e-2494148155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G123800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595391.10.0transcription factor TCP2-like
RefseqXP_021595392.10.0transcription factor TCP2-like
RefseqXP_021595393.10.0transcription factor TCP2-like
TrEMBLA0A2C9UGE50.0A0A2C9UGE5_MANES; Uncharacterized protein
STRINGcassava4.1_006618m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.26e-43TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2