PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G119400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family M-type_MADS
Protein Properties Length: 196aa    MW: 22214.5 Da    PI: 9.7301
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G119400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.27.7e-171967149
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         k+ien+  + +tfskRr gi KKA+EL +L+++e a ++fs+ gk + +
  Manes.15G119400.1.p 19 KKIENEDDKLITFSKRRSGIYKKASELVILTGTELAFVVFSPAGKPFSF 67
                         68******************************************97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-241170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.241171IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-231290IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-171333IPR002100Transcription factor, MADS-box
PfamPF003192.4E-202067IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-173348IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-174869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MATQTQEKKT KGRQRIEMKK IENEDDKLIT FSKRRSGIYK KASELVILTG TELAFVVFSP  60
AGKPFSFAHP SVDAIINRFS GEQPQPNIQS STHPLIEAHR RVRIEEINRE SNELLHHLDS  120
VKEKGKQLKQ KMTGNEIKGW WDTPIEEMSV QQMLEAEAAC GEIRAKLINK LKAKTYDGAC  180
AAHHQAQIMN PFFFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A5e-13281786PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B5e-13281786PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G119400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595120.11e-145agamous-like MADS-box protein AGL62
TrEMBLA0A2C9UFE71e-144A0A2C9UFE7_MANES; Uncharacterized protein
STRINGcassava4.1_021567m1e-144(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-39AGAMOUS-like 62