PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.15G090000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 187aa MW: 21091 Da PI: 8.2379 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.9 | 1.7e-18 | 18 | 71 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +R+++t++q++ Le+ F n+++ e + LA++lg++ rqV +W+qN+Ra++k Manes.15G090000.1.p 18 SRRRLTQDQVRLLERTFIANKKLEPELKLALANQLGVPPRQVAIWYQNKRARWK 71 699**************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 106.4 | 2.2e-34 | 19 | 109 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +rrl+++qv+lLE++F +++kLepe K +la++Lg+ prqva+W+qn+RAR+kt+ lE dy++++ ++++ +e++rLekev +Lr+el+ Manes.15G090000.1.p 19 RRRLTQDQVRLLERTFIANKKLEPELKLALANQLGVPPRQVAIWYQNKRARWKTQSLELDYNTVQVKLENALAEKKRLEKEVMQLRDELS 108 79*************************************************************************************998 PP HD-ZIP_I/II 93 e 93 + Manes.15G090000.1.p 109 K 109 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.645 | 13 | 73 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.07E-17 | 14 | 81 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.4E-15 | 15 | 77 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-18 | 18 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.3E-16 | 18 | 71 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.79E-15 | 19 | 74 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 48 | 71 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MDFFHSQAQH KHPPKNGSRR RLTQDQVRLL ERTFIANKKL EPELKLALAN QLGVPPRQVA 60 IWYQNKRARW KTQSLELDYN TVQVKLENAL AEKKRLEKEV MQLRDELSKA REMMFACNQG 120 IIPSHPSHHF HPLLPPQPPL NVSCNSSCDD GGGGSSLHED INGEVLQFDE LYACLISPGC 180 GGSTWA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.15G090000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021595809.1 | 1e-138 | homeobox-leucine zipper protein ATHB-52-like | ||||
TrEMBL | A0A2C9UEG8 | 1e-137 | A0A2C9UEG8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_030094m | 1e-138 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11011 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 3e-30 | homeobox protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Manes.15G090000.1.p |