PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.15G080500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 450aa MW: 49674.9 Da PI: 6.5158 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.7 | 6.4e-06 | 339 | 377 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Manes.15G080500.1.p 339 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 377 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.589 | 328 | 377 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.15E-7 | 338 | 381 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-11 | 338 | 394 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0049 | 339 | 383 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-9 | 342 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MADEFNTTTN WWESSRNRFD TGPSSSSSGL NSLGSFAWPS EMVDVKGRSS IESATVSDSS 60 VVFHDTQKLQ QGHDSGPDLH MMGLGLSSQA MDWNHALLRG DKTDGSFRSM LQENLNSSTS 120 YQQETGIGSS HVQWRERMFS GDSSMNEFKQ MGRGFSLDQP QFSPHESSSD STVTCQALQS 180 SGFQMDSTAI YGSPSTMLQG LLVSDNQPTQ QASFENRPMS YPYGANYGIS SNELVPSWSN 240 KVPQFLRNSP PKQPPHSQLH FSNNAPFWNA SASSMSDVRP NFFPSLQPQF PTSNFEEKPK 300 QNISEIRDSS TVVKKSGSEP AATKRPRNET PSPMPAFKVR KEKMGDRITA LQQLVSPFGK 360 TDTASVLSEA IEYIKFLHEQ VTVLSTPYMK SGAPIHHQQS SDKSNKDPEG QKPDLRSRGL 420 CLVPISSTFP VTHETTVDFW TPTFGGTFR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.15G080500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021593920.1 | 0.0 | transcription factor bHLH123-like isoform X1 | ||||
Swissprot | Q8GXT3 | 2e-94 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A0A2C9UDY7 | 0.0 | A0A2C9UDY7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_007585m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1118 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 1e-96 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.15G080500.1.p |
Publications ? help Back to Top | |||
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