PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.15G067100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | DBB | ||||||||
Protein Properties | Length: 173aa MW: 18963.4 Da PI: 6.4034 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.4 | 1.2e-07 | 4 | 34 | 5 | 35 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHk 35 C+ +e+ ++ fC ++ lC+ C ++ Hk Manes.15G067100.1.p 4 LCDACESAAAIVFCAADEAALCHACDEKVHK 34 7***************************995 PP | |||||||
2 | zf-B_box | 30.8 | 5.9e-10 | 52 | 91 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + ++C+ +e+ ++ ++Ce +++ lC +C ++ H g H Manes.15G067100.1.p 52 DVPRCDICENAPAFFYCEVDGSSLCLQCDVTVHVGgkrtH 91 6799*****************************6655556 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.04 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 8.9E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.92E-6 | 3 | 45 | No hit | No description |
Pfam | PF00643 | 2.7E-6 | 3 | 43 | IPR000315 | B-box-type zinc finger |
SuperFamily | SSF57845 | 7.88E-5 | 48 | 86 | No hit | No description |
SMART | SM00336 | 5.9E-10 | 51 | 96 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.015 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.6E-8 | 52 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.34E-7 | 54 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MRTLCDACES AAAIVFCAAD EAALCHACDE KVHKCNKLAS RHVRVGLANP SDVPRCDICE 60 NAPAFFYCEV DGSSLCLQCD VTVHVGGKRT HGRYLLFRQQ VEFPKDAAEP STSHAIIMNQ 120 DENKKGQNQQ NHVTPSEAKS DGHARMENKM IDLNMKPTAV RVHEQAPNDQ VD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.15G067100.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021593727.1 | 1e-126 | B-box zinc finger protein 19-like | ||||
Swissprot | C0SVM5 | 4e-70 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A2C9UDG7 | 1e-125 | A0A2C9UDG7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_017602m | 1e-126 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2734 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 2e-72 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.15G067100.1.p |