PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G063500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 530aa    MW: 59030.6 Da    PI: 5.1525
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G063500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS462.32.9e-1411595291374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l+e+L +cA+av+++d+  +++l+ +l++++s +g+p+qRl ay++e+L arla+s+s++ykal+++e +   s+e l+++++++ev+P+
  Manes.15G063500.1.p 159 LKEALCACAQAVANKDMLTVEWLMMELRQMVSVSGEPIQRLGAYMLEGLVARLASSGSSIYKALRCKEPA---SAELLSYMHILYEVCPY 245
                          5789*****************************************************************9...9**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          +kf+++ aN aI eav+ e++vHiiDf+isqG QW +L+qaLa+Rp+gpp++R+Tg+++++s   +   l  +g+rL+++A++++vpfef
  Manes.15G063500.1.p 246 FKFGYISANGAIAEAVKDEKKVHIIDFQISQGSQWFTLIQALAARPGGPPHIRLTGIDDSTSAyaRGGGLDIVGQRLSRLAQSCNVPFEF 335
                          ***********************************************************998899999********************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          ++ +a + ++++le+L ++pgEa+aVn++l lh+++desv+++++rd++L+lvkslsPkvv++veqe+++n+++Fl rf+e+l+yy+a+f
  Manes.15G063500.1.p 336 HA-AAVSASEIQLENLGIQPGEAIAVNFALTLHHVPDESVDTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAPFLPRFIETLNYYTAVF 424
                          **.899************************************************************************************ PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          +s++++lpre++eri+vE+++l+re+vn+vacegaer+erhe l+kWr+r+ +aGF p+pls+++++++k+ll+ ++++ +++ee++g+l
  Manes.15G063500.1.p 425 ESIDVTLPREHKERINVEQHCLAREVVNLVACEGAERVERHEPLSKWRSRFAMAGFVPYPLSTFVNATIKTLLESYSNK-FTLEERDGAL 513
                          *****************************************************************************66.********** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          +lgW++rpL++ +aWr
  Manes.15G063500.1.p 514 YLGWMNRPLIASCAWR 529
                          ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098570.328133510IPR005202Transcription factor GRAS
PfamPF035141.0E-138159529IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MDGSHMFYDQ PMQGQDSYSW HPDQNLGQYP ISDDGSQEMH LSAESFEQHC TLESSSGTGC  60
DPVHNSPPSA GFSSNESAIS QLNSRSCLLD MHDSSENTSS SPDRDSYVTH KLRELESMML  120
EPIDDPDIYN IMTPAGHSHI TFEEKKYKYL VEMTSRGDLK EALCACAQAV ANKDMLTVEW  180
LMMELRQMVS VSGEPIQRLG AYMLEGLVAR LASSGSSIYK ALRCKEPASA ELLSYMHILY  240
EVCPYFKFGY ISANGAIAEA VKDEKKVHII DFQISQGSQW FTLIQALAAR PGGPPHIRLT  300
GIDDSTSAYA RGGGLDIVGQ RLSRLAQSCN VPFEFHAAAV SASEIQLENL GIQPGEAIAV  360
NFALTLHHVP DESVDTQNHR DRLLRLVKSL SPKVVTLVEQ ESNTNTAPFL PRFIETLNYY  420
TAVFESIDVT LPREHKERIN VEQHCLAREV VNLVACEGAE RVERHEPLSK WRSRFAMAGF  480
VPYPLSTFVN ATIKTLLESY SNKFTLEERD GALYLGWMNR PLIASCAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-651615296375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G063500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595662.10.0scarecrow-like protein 21
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A251J3940.0A0A251J394_MANES; Uncharacterized protein
STRINGcassava4.1_026849m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]