PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.15G057200.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

HSF

Protein Properties

Length: 493aa MW: 55349.1 Da PI: 5.6238

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.15G057200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.9	2.2e-35	23	113	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl k+y++++d++++e++sws+n+nsfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F k++k Manes.15G057200.1.p 23 FLLKTYDMVDDSSTDEIVSWSSNENSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEFVKDQK 103 9**************************************************************999.........********* PP XXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkk 101 +ll++i+r+k Manes.15G057200.1.p 104 HLLKNIHRRK 113 ******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	6.3E-38	19	112	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	5.28E-36	19	112	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.7E-60	19	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.7E-19	23	46	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	4.9E-31	23	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.7E-19	61	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	62	86	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.7E-19	74	86	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MEVAPNSASS AVASGGGGGP APFLLKTYDM VDDSSTDEIV SWSSNENSFV VWNPPEFARL 60 LLPTYFKHNN FSSFIRQLNT YGFRKIDPER WEFANEEFVK DQKHLLKNIH RRKPIHSHSH 120 PQGSLGDPER AALEEEIDRL SREKASLEAS VLGSKQQRSA EKLQLEDLTH RVDSMEQRQE 180 RLLTCLEKAV QNPNFIEHLA QKLDSMDFSA YNKKRRLPQV DHSKSIVENS FVDNQSFSRP 240 EVGNVIRQDF SNKLRLELSP AVSDINLVSK STQSSNEDGG SPQRKISEGD PKDAPPRTSC 300 LLFPAETFEL SDTGTSYPYK VDPPFTRKVT VNETPGLHLL QQNFTSNEEV DGHISCHLNL 360 TLASSPLQVN RNPYPARMTQ LHQEICRSPE SQFNGNGKES DTMATSKDRN AGDGDTTLSP 420 TKEAPNSSQG PAAVPARVND VFWEQFLTER PGSFDNEEAS SNYRANPYEE QEDRKSSHGV 480 VRNVKNMEHL YL*

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MEVAPNSASS AVASGGGGGP APFLLKTYDM VDDSSTDEIV SWSSNENSFV VWNPPEFARL  60
LLPTYFKHNN FSSFIRQLNT YGFRKIDPER WEFANEEFVK DQKHLLKNIH RRKPIHSHSH  120
PQGSLGDPER AALEEEIDRL SREKASLEAS VLGSKQQRSA EKLQLEDLTH RVDSMEQRQE  180
RLLTCLEKAV QNPNFIEHLA QKLDSMDFSA YNKKRRLPQV DHSKSIVENS FVDNQSFSRP  240
EVGNVIRQDF SNKLRLELSP AVSDINLVSK STQSSNEDGG SPQRKISEGD PKDAPPRTSC  300
LLFPAETFEL SDTGTSYPYK VDPPFTRKVT VNETPGLHLL QQNFTSNEEV DGHISCHLNL  360
TLASSPLQVN RNPYPARMTQ LHQEICRSPE SQFNGNGKES DTMATSKDRN AGDGDTTLSP  420
TKEAPNSSQG PAAVPARVND VFWEQFLTER PGSFDNEEAS SNYRANPYEE QEDRKSSHGV  480
VRNVKNMEHL YL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-21	16	112	19	129	Heat shock factor protein 1
5d5v_B	2e-21	16	112	19	129	Heat shock factor protein 1
5d5v_D	2e-21	16	112	19	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.15G057200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021595484.1	0.0	heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-177	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A2C9UDG4	0.0	A0A2C9UDG4_MANES; Uncharacterized protein
STRING	cassava4.1_006311m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4961	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-179	HSF family protein

Link Out ? help Back to Top
Phytozome	Manes.15G057200.1.p

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]