PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.15G053300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | G2-like | ||||||||
Protein Properties | Length: 312aa MW: 33565 Da PI: 6.2629 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108.9 | 2.6e-34 | 42 | 96 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl Manes.15G053300.1.p 42 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 96 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.612 | 39 | 99 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-33 | 39 | 98 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.97E-17 | 41 | 98 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-24 | 42 | 97 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.6E-9 | 44 | 95 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 7.7E-27 | 143 | 189 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MYSAIHSLPL DGSGGHGEFQ GGSLDGTNLP GDASLVLTTD PKPRLRWTAE LHERFVDAVT 60 QLGGPDKATP KTIMRTMGVK GLTLYHLKSH LQKYRLGRQS CKESNDNSKD VGIAASVAES 120 QDTGSSTSTS SRMIAQDINE GYQVTEALRV QMEVQRRLHE QLEVQRRLQL RIEAQGKYLQ 180 SILEKACKAL NDEAAASAVL EAAREELSEL AIKVSGKCQE IVPVANVKMP PFSELAAALE 240 NKSTANLPAR IGDCSVESCL TSTGSPVSPM GVGSQAAASI KKRPRSGFGN EEALPLEDNM 300 REVEWMMSNV G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 4e-20 | 42 | 98 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-20 | 42 | 98 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-20 | 42 | 98 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-20 | 42 | 98 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.15G053300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021595223.1 | 0.0 | protein PHR1-LIKE 3-like isoform X1 | ||||
Swissprot | Q94A57 | 1e-131 | PHL2_ARATH; Protein PHR1-LIKE 2 | ||||
TrEMBL | A0A2C9UD09 | 0.0 | A0A2C9UD09_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_012328m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13367 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.1 | 1e-114 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.15G053300.1.p |
Publications ? help Back to Top | |||
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