PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G037600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 217aa    MW: 23858.7 Da    PI: 9.9205
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G037600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-055880123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C++ F++   L  H+++H
  Manes.15G037600.1.p 58 YTCSFCKREFRSAQALGGHMNVH 80
                         9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.32E-65584No hitNo description
PfamPF139121.4E-65881IPR007087Zinc finger, C2H2
SMARTSM003550.00385880IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.245885IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MKRNSMSNSL KDHTIGSRTS SSSNNIQSNN KLKCSWNYNS QSCGEDYLSG FSWPPRSYTC  60
SFCKREFRSA QALGGHMNVH RRDRARLRQS PPRDGPILNL NVNPNPNPSK SPPFTCTLPS  120
SAAATPPRGL SVLSSPSFAS SSETKKWAMD DSLSHDHLSP KSSDLTKPRN AFLSDGFTRE  180
GGCKFLKKAE ILRLDLEIGL SGSKEDLDLE LRLGYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-145380229superman protein
2l1o_A4e-145380229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G037600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9873012e-40JX987301.1 Populus tomentosa isolate PtoSUP2 superman gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593709.11e-157transcriptional regulator SUPERMAN-like
TrEMBLA0A2C9UEJ81e-156A0A2C9UEJ8_MANES; Uncharacterized protein
STRINGcassava4.1_030974m1e-156(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.14e-33C2H2 family protein