PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G031500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CPP
Protein Properties Length: 754aa    MW: 82680.4 Da    PI: 5.7728
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G031500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR505.7e-16459497240
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                           +k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk 
  Manes.15G031500.1.p 459 ACKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKP 497
                          589**********************************96 PP
2TCR50.54.1e-16544582139
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Manes.15G031500.1.p 544 RHKRGCNCKKSSCLKKYCECYQGGVGCSINCRCEGCKNA 582
                          589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.6E-17458499IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.529459584IPR005172CRC domain
PfamPF036381.5E-11461496IPR005172CRC domain
SMARTSM011142.9E-17544585IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-11546582IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MDTPEKTQIT TSLSKFEDSP VFNYINSLSP IKPVKSLHIT QAFHSLSFAS LPSIFTSPHV  60
SSNKESRFLR RHQYSDPSKS GFSSENGNKV SSEEEADLDV AQLYDNSDEL QENFDPGVSI  120
GEVSVEPPSE DLKFAVELPR RLRYDCGSPE YEATGTTPSC GPQTDQTSEL PGISRKCSPE  180
HELHLQGIHQ TEQKKEATDC VWENLMSDDT DLLIFHSPID TEAFKGLMQK SLDLDASFSP  240
SLDEVQKVRI DPSTQPGETG VPMEINQTQE NLNEHVDVDN EVGMSAKVLS KGISVLYRGM  300
RRRCLDFETV GAHRKDLDDS SNSSTSGGGQ SEEKVAPKDK QLVLFKPGRD SSRCVLPGIG  360
LHLNALAISC KDSKNVKHET LSSGKSLSSF VASSHSQNNG QEPNESLSLV STEIDIDPTE  420
NEVPLVEDVP QASACLVTEE FNPSSPKKKR RKLEGESEAC KRCNCKKSKC LKLYCECFAA  480
GVYCIEPCSC QECFNKPIHE DTVLATRKQI ESRNPLAFAP KVIRSSETAN EVGDESSKTP  540
ASARHKRGCN CKKSSCLKKY CECYQGGVGC SINCRCEGCK NAFGRKDGSA PTETETEPED  600
DTERCENNGV DKISEKTEIQ NKEEQHPNSA LPITPLAICR PLLQLPFSSK SKPPRSFLSI  660
GSSSGLCTGQ KYGKPNILKP QTKFETQAQT IYDDDMPEIL RGNYSPSTGI KTSPNSKRVS  720
PPHSILGSST GQRTGRKLIL QSIPSFPSLT PQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1746358114120Protein lin-54 homolog
5fd3_B3e-1746358114120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1445452PKKKRRKL
2446450KKKRR
3446451KKKRRK
4447451KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00433DAPTransfer from AT4G14770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G031500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593493.10.0protein tesmin/TSO1-like CXC 2 isoform X2
TrEMBLA0A2C9UCH40.0A0A2C9UCH4_MANES; Uncharacterized protein
STRINGcassava4.1_002257m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-168TESMIN/TSO1-like CXC 2