PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G014500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 482aa    MW: 51082.9 Da    PI: 7.7453
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G014500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.73.4e-124974227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         ++  C +++rtG+C yG+rC+F+H++
  Manes.15G014500.1.p 49 DEDDCIYYLRTGFCGYGARCRFNHPR 74
                         5789********************96 PP
2zf-CCCH38.12.7e-1296120327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C++++rtG Ck+G +Ck++H++
  Manes.15G014500.1.p  96 QPVCQYYMRTGACKFGTSCKYHHPK 120
                          789********************96 PP
3zf-CCCH352.5e-11141166227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C ++ +tG+Ck+G++CkF+H++
  Manes.15G014500.1.p 141 GEKECTYYIKTGQCKFGATCKFHHPQ 166
                          7899********************97 PP
4zf-CCCH38.71.7e-12306332127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+++++tG Ck+G++C+++H+p
  Manes.15G014500.1.p 306 PGQPECQYYMKTGDCKFGSSCRYHHPP 332
                          5789*********************97 PP
5zf-CCCH28.33e-09355378427
                          ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          + C ++ + G+Ck+G+ CkF H++
  Manes.15G014500.1.p 355 PTCTHYTQRGQCKFGPACKFDHPM 378
                          78********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.3E-44774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8174775IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-94974IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-65075IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-65375IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.41393121IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-793120IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-1096120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-696120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-498119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.075139167IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4139166IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-8141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6141167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4145165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.389305333IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6305332IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-10307332IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-5309332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4311332IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-6351378IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408351379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5354381IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-7355378IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4357376IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MDRYGWTQEG SQSDPSPEWT ASGPETELEE GVWQLGLGEG ESGYPERPDE DDCIYYLRTG  60
FCGYGARCRF NHPRERGAAI APARAGAGEF PERLGQPVCQ YYMRTGACKF GTSCKYHHPK  120
QGGGSVIPVS LNYYGYPLRP GEKECTYYIK TGQCKFGATC KFHHPQPASL QMATQSLAPQ  180
VAPVPAPVAG PALYHQMQSP SIPSTQQYGL VVARPPLMPG SYVQGPYGPM LLSPGVVSYP  240
SWSPYAAHVS PVASPNTQQG VGSGSVYGIT QLSPSAPAYT GAYQPMPTSI GPSSSSQKEQ  300
SFPERPGQPE CQYYMKTGDC KFGSSCRYHH PPEFIAPRTT VVLNPIGLPM RPGAPTCTHY  360
TQRGQCKFGP ACKFDHPMGT LSYSPSASSL ADMPVSPYPV GSSIGTLAPS SSSSELRPDL  420
ISGSSKESSS TRMSSSSSTS SGLVGSTFSK SGSVPHSDAQ QSSQRSGPST GSSSTEACTS  480
I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G014500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595338.10.0zinc finger CCCH domain-containing protein 34-like
SwissprotQ6NPN31e-166C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A2C9UD140.0A0A2C9UD14_MANES; Uncharacterized protein
STRINGcassava4.1_006608m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-153C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]