PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G009900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 270aa    MW: 29932.7 Da    PI: 6.2967
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G009900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-2096144355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          y+G+r+++ +g+W+AeIrdp     +  r++lg++ taeeAa+a+++a+k+++g
  Manes.15G009900.1.p  96 YRGIRQRP-WGKWAAEIRDPH----KgVRVWLGTYNTAEEAARAYDEAAKRIRG 144
                          9*******.**********72....35************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.35495152IPR001471AP2/ERF domain
SMARTSM003808.5E-3895158IPR001471AP2/ERF domain
CDDcd000186.53E-3395151No hitNo description
SuperFamilySSF541711.83E-2295153IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.9E-3295153IPR001471AP2/ERF domain
PRINTSPR003671.4E-1196107IPR001471AP2/ERF domain
PfamPF008471.2E-1496144IPR001471AP2/ERF domain
PRINTSPR003671.4E-11118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MCGGAIISDF VAVKRSRRWN AEDLWSELDT FSDFLGLDYP NNANKDQIST QLDLKLPEKQ  60
KEQQLLSQVA IGSEKSEKTT TATEGNKSQR IRKNIYRGIR QRPWGKWAAE IRDPHKGVRV  120
WLGTYNTAEE AARAYDEAAK RIRGDKAKLN FGQSPSPPPP QATSASPTVP PPSKKRCLIA  180
SEMTAAGFQT CSVPAPPPYM GVGVGYQKEL GSECELKEQI SSLETFLELE PEQMVAQLSG  240
SSCETSESVD LWMLDDLVSH HQNQRQLSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-2296151359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G009900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9146491e-162JQ914649.1 Hevea brasiliensis AP2/ERF super family protein (ERF5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593495.10.0ethylene-responsive transcription factor RAP2-3-like
TrEMBLA0A2C9UCT20.0A0A2C9UCT2_MANES; Uncharacterized protein
STRINGcassava4.1_013880m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48923353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.15e-45ethylene-responsive element binding protein