PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G003000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 319aa    MW: 36198.2 Da    PI: 7.0005
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G003000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-183481148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT+eEd  l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  Manes.15G003000.1.p 34 RGPWTAEEDFNLINYIATHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 81
                         89********************************************97 PP
2Myb_DNA-binding49.59.8e-1687130146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T eE++ +++++ ++G++ W++Ia++++ gRt++++k++w++
  Manes.15G003000.1.p  87 RGNITLEEQLMILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 130
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.5022981IPR017930Myb domain
SuperFamilySSF466894.49E-3132128IPR009057Homeodomain-like
SMARTSM007171.1E-153383IPR001005SANT/Myb domain
PfamPF002491.1E-163481IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-233588IPR009057Homeodomain-like
CDDcd001671.15E-113681No hitNo description
PROSITE profilePS5129422.70782136IPR017930Myb domain
SMARTSM007172.6E-1486134IPR001005SANT/Myb domain
PfamPF002491.9E-1487130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-2389135IPR009057Homeodomain-like
CDDcd001672.22E-1091130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MMDFKARYST HKITGSSSST TTTQSEEEMG GLRRGPWTAE EDFNLINYIA THGEGRWNSL  60
ARCAGLKRTG KSCRLRWLNY LRPDVRRGNI TLEEQLMILE LHSRWGNRWS KIAQHLPGRT  120
DNEIKNYWRT RVQKHAKQLK CDVNSKQFKD TMRYLWMPRL IERIQAANTT AASSTTAACT  180
IGSGTTTEAT HHHHLNDNTN TDVGSGQWVV AHVGVFGGDF GVAQVIPTTY NTPETWNTAA  240
SSESFGTHIW PNDHFSLSVN PDNLQPEQVG YSESMISPSG YFNQVLDFQA MEHDNNLWVE  300
GGYTSDNLWK VEDMWFNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-243212825120MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G003000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595844.10.0transcription factor MYB108-like
TrEMBLA0A2C9UCQ90.0A0A2C9UCQ9_MANES; Uncharacterized protein
STRINGcassava4.1_033248m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.11e-84myb domain protein 108