PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G168800.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 1201aa    MW: 134931 Da    PI: 6.4323
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G168800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.2e-10439483246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          ++WT+eEd++l+  v++ G+ +W  Ia  +g++Rt+ qc  r+q 
  Manes.14G168800.2.p 439 NKWTAEEDKKLLFIVQEKGMTNWFNIAVSLGTNRTPFQCLARFQR 483
                          69***************************************9995 PP
2Myb_DNA-binding43.11e-13491535146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          r+ WT+eEd +l +av  +G ++W ++a+t+  gRt+ qc +rw k
  Manes.14G168800.2.p 491 RKEWTEEEDAQLHNAVGIYGEHDWQSVASTLE-GRTGTQCSNRWKK 535
                          789*****************************.***********87 PP
3Myb_DNA-binding48.91.5e-15544588146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +grWT +E ++l+ av ++G+++W++Iar ++  Rt+ qc++rw +
  Manes.14G168800.2.p 544 KGRWTLDERKRLKVAVMLFGPKNWNKIARFVP-ERTATQCRERWVN 588
                          79******************************.***********76 PP
4Myb_DNA-binding49.21.2e-15598641348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           WT+eEd +l+ a++++G   W++Ia++++  Rt+ qc+ rw  +l
  Manes.14G168800.2.p 598 QWTEEEDTRLKAAIEEYGYC-WAKIAKCLP-PRTDSQCRRRWKVLL 641
                          7*****************99.*********.9**********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.297333432IPR017877Myb-like domain
SMARTSM007170.034337434IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-7340356IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-7405442IPR009057Homeodomain-like
SuperFamilySSF466892.64E-15415482IPR009057Homeodomain-like
PROSITE profilePS512949.763433485IPR017930Myb domain
SMARTSM007175.7E-9437487IPR001005SANT/Myb domain
CDDcd001674.02E-7440485No hitNo description
PfamPF139211.3E-13441502No hitNo description
Gene3DG3DSA:1.10.10.602.2E-13443491IPR009057Homeodomain-like
SuperFamilySSF466897.59E-19470538IPR009057Homeodomain-like
PROSITE profilePS5129419.668486541IPR017930Myb domain
SMARTSM007174.3E-13490539IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-16492540IPR009057Homeodomain-like
CDDcd001676.92E-11493535No hitNo description
Gene3DG3DSA:1.10.10.602.6E-15542590IPR009057Homeodomain-like
SMARTSM007173.7E-14543592IPR001005SANT/Myb domain
SuperFamilySSF466898.27E-26543637IPR009057Homeodomain-like
PROSITE profilePS5129412.842543590IPR017930Myb domain
PfamPF002494.5E-14544588IPR001005SANT/Myb domain
CDDcd001675.13E-12546588No hitNo description
PROSITE profilePS5129424.066591645IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-17591641IPR009057Homeodomain-like
SMARTSM007178.1E-15595643IPR001005SANT/Myb domain
PfamPF002499.2E-14598641IPR001005SANT/Myb domain
CDDcd001676.11E-14599641No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1201 aa     Download sequence    Send to blast
MPSLLQNDDA YKDLSSDDDD DDGFDDDIEA LRRACTLAGT NLSDLNIENG ENNTRYPSAE  60
VDRESSGGEG DEDEDDFKLF RNIKNRFLMG TDLGEPFYLK PICAIPFDLD DEEDDFETLC  120
AVRKRFVAYD NSDISERRLE NVADKSEGVD ASSAVSELVT SDDSIIGRRA CKVFPDTEES  180
LNSTLISDSM EIQPSGYIEQ QTLLDACKFS SLGLKDSSNF PKSAQVFVDA IKKNRSCQKF  240
LRSKLAQIEA RIEENKKLKE RVKILRDFQA SCKKITGRAL AQRKDPRIQL ISTPRISNSR  300
DSKVNDKKVS AMHTGPLENS HVANYRMALT NFPLHLSRKK WTEAERENLR KGIRQQFQEM  360
VLQFSVDEFS GLEGSPGNVN DLDAILASIR EMEITPERIR EFLPKVNWDQ LASLYVVGRT  420
GAECEAQWLN SEDPLINHNK WTAEEDKKLL FIVQEKGMTN WFNIAVSLGT NRTPFQCLAR  480
FQRSLNAHII RKEWTEEEDA QLHNAVGIYG EHDWQSVAST LEGRTGTQCS NRWKKSIHPD  540
KGRKGRWTLD ERKRLKVAVM LFGPKNWNKI ARFVPERTAT QCRERWVNSE DPSLNMDQWT  600
EEEDTRLKAA IEEYGYCWAK IAKCLPPRTD SQCRRRWKVL LPHEVPLLQA ARKTQKVAII  660
GNFVDRESER PALGPHDFVP SSMITSVSGS EKTSQSRKRK RKTREGGVSG KETNAAASNM  720
QDPGVTNGIE VEKWIKSSSE KNCLMKPSQD VIGDEGGDIR KKRKLPKLHL KRNMLFETYG  780
NRHPECLELG MTNVDGLKTS GRESGTPSEE IRDQEQHSDS NVCTSTGEEE RSIAITNVTE  840
LDHDHQVSNV LVINDDHGET VGQPDVSSKD VTNLSLKGKA LMEIESRVDN GEGVGKSSLD  900
GISLIKARKT PHCMSKSRTE LSGQCNYVES IPCQHDGHRK PKLSKSRSKH VLEMNDEDDG  960
MLASFCQNTA KKRRLQVVKN ADKKSCNKQV LETNDEDDVT LASFCQSISK KKRLQVVKNL  1020
DQTSPPLYMG SDSVSKRVDQ HNDHNKRSSL VKDGEVQTHC SGGLAENVLS DEPNMVDMAN  1080
CWTDAPQEPM RQPIDHDDDL ETSDITLASL LHDKQQKRGQ VFTRSGGQPN NLPRVKKRSR  1140
SLAKGVKQCC NGRSSKTLSC CEIQSSGTSS MPTNPCHLVM ESVSTSVGVH EDTEVLPPGL  1200
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-294076372155MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-294076372155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1696701RKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G168800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021592290.10.0uncharacterized protein LOC110599954
TrEMBLA0A251JEA70.0A0A251JEA7_MANES; Uncharacterized protein
STRINGcassava4.1_000461m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1