PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.14G161500.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

CO-like

Protein Properties

Length: 368aa MW: 40362.5 Da PI: 6.4085

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.14G161500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.1	3.2e-07	19	60	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +r+C+ ++ + fC+ ++ +lC +C +++H H+ Manes.14G161500.1.p 19 ARCCDSCKTATAAAFCRADSAFLCLNCDSKIHAAnklvsrHE 60 689*****************************6555666665 PP
2	zf-B_box	27.3	7.7e-09	62	107	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C +H+ H++vp+ Manes.14G161500.1.p 62 VWMCEVCEQAPAAVNCKADAASLCVTCDADIHSAnplarrHERVPV 107 689*****************************66899999999986 PP
3	CCT	68	2.5e-23	294	337	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeKrk+RkF+K+irY+sRKa+Ae+RpR+KGrF+k++ Manes.14G161500.1.p 294 REARVLRYKEKRKNRKFKKTIRYASRKAYAETRPRIKGRFAKRT 337 9*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.239	17	64	IPR000315	B-box-type zinc finger
SMART	SM00336	4.3E-12	17	64	IPR000315	B-box-type zinc finger
Pfam	PF00643	4.0E-5	19	61	IPR000315	B-box-type zinc finger
CDD	cd00021	3.11E-7	22	64	No hit	No description
PROSITE profile	PS50119	10.552	60	107	IPR000315	B-box-type zinc finger
Pfam	PF00643	8.0E-7	62	107	IPR000315	B-box-type zinc finger
CDD	cd00021	1.32E-7	63	107	No hit	No description
SMART	SM00336	5.4E-9	65	107	IPR000315	B-box-type zinc finger
Pfam	PF06203	1.1E-17	294	336	IPR010402	CCT domain
PROSITE profile	PS51017	16.479	294	336	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MGVEIQGLDT CTAGWTVSAR CCDSCKTATA AAFCRADSAF LCLNCDSKIH AANKLVSRHE 60 RVWMCEVCEQ APAAVNCKAD AASLCVTCDA DIHSANPLAR RHERVPVEPF FDSAESIVKS 120 SPFNFLVPCD QNGGPTGYHL HHEDDVEGFS WLLPNPTTLS SKLCMENPEM KAAGDLIFPE 180 TDPFLDMEFH PSHSAATDSV VPVQTKPAPI PVINNEVCYD VDFCRSKLSS FNYTTQSLSQ 240 SISSSSLDVV VPDGNSMSDI SYPFGRNLNT GADPSAPIST STTNQAAQMC GIDREARVLR 300 YKEKRKNRKF KKTIRYASRK AYAETRPRIK GRFAKRTEIE SEMDRLYNSP SSVSFMSDGQ 360 YGVVPSF*

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MGVEIQGLDT CTAGWTVSAR CCDSCKTATA AAFCRADSAF LCLNCDSKIH AANKLVSRHE  60
RVWMCEVCEQ APAAVNCKAD AASLCVTCDA DIHSANPLAR RHERVPVEPF FDSAESIVKS  120
SPFNFLVPCD QNGGPTGYHL HHEDDVEGFS WLLPNPTTLS SKLCMENPEM KAAGDLIFPE  180
TDPFLDMEFH PSHSAATDSV VPVQTKPAPI PVINNEVCYD VDFCRSKLSS FNYTTQSLSQ  240
SISSSSLDVV VPDGNSMSDI SYPFGRNLNT GADPSAPIST STTNQAAQMC GIDREARVLR  300
YKEKRKNRKF KKTIRYASRK AYAETRPRIK GRFAKRTEIE SEMDRLYNSP SSVSFMSDGQ  360
YGVVPSF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.14G161500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021592778.1	0.0	zinc finger protein CONSTANS-LIKE 5-like
Swissprot	Q9FHH8	1e-121	COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBL	A0A2C9UP47	0.0	A0A2C9UP47_MANES; Uncharacterized protein
STRING	cassava4.1_010137m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1302	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	1e-107	CONSTANS-like 5

Link Out ? help Back to Top
Phytozome	Manes.14G161500.1.p

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518]