PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G158300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HB-PHD
Protein Properties Length: 735aa    MW: 83213.3 Da    PI: 9.969
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G158300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox34.14.6e-11512556953
                          HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
             Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                          ++ +e+L e+F++n  ps++ +e L+k+lgL+  +V+ WF+N R+
  Manes.14G158300.1.p 512 PSAVERLREVFAENELPSRTVKENLSKELGLDPGKVSKWFKNARY 556
                          67899**************************************97 PP
2PHD361.6e-12242296150
                          SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
                  PHD   1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 
                          +C+ C++++   ++++vlCd +C+ +fH+kCl+++l++e++p g   w+C+ C++
  Manes.14G158300.1.p 242 FCAKCKSNEVfpDNDIVLCDgTCNCAFHQKCLDPPLDTESIPPGdqGWYCKFCEC 296
                          6999**944345********56********************9999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579037.75E-14234300IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.2E-11238297IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.433240297IPR019787Zinc finger, PHD-finger
PfamPF006281.2E-9242296IPR019787Zinc finger, PHD-finger
SMARTSM002494.9E-8242295IPR001965Zinc finger, PHD-type
CDDcd155041.37E-32242294No hitNo description
PROSITE patternPS013590243294IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.602.1E-12498555IPR009057Homeodomain-like
SuperFamilySSF466891.92E-10499556IPR009057Homeodomain-like
PROSITE profilePS5007112.276501561IPR001356Homeobox domain
SMARTSM003891.8E-9503565IPR001356Homeobox domain
CDDcd000868.61E-9504563No hitNo description
PfamPF000461.2E-8512556IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MRGAGKKATH QESNKCSFSK TENGSVLIAS FKLKKGSKLS HCKKHKPKPK SKSTSQSHIK  60
AIGKNLLKST VTDPSSRRIR NDSTSRKLIS RKILKKALEP KKLASSKPRG KHSSVIASEE  120
NGKKANRDVT IKNLNKRRNK RRRKEKVELD EPSRLQRRAR YLLIKMKLEQ NLIDAYSGEG  180
WKGQSREKIK PEKELQRAKK QILKCKLGIR DAIHQLDSLS TVGCIEDSVI APDGSVSHEH  240
IFCAKCKSNE VFPDNDIVLC DGTCNCAFHQ KCLDPPLDTE SIPPGDQGWY CKFCECRMEI  300
IEAMNAHLGT QFSVNAAWQD IFKEEANFSD GGSMLLNPEQ EWPSDDSADD DYDPERRENS  360
ISGAGTDNDA SDDASSATSL GWSSDGEVFS GSRKWEMEST DFRNQSIYSS LDSDESSDGE  420
IMCGPRRRRA VDYKKLYDEM FGKDAPAHEQ VSEDEDWGPG KRKRREKESD AASTLMTLYE  480
SEKKSKKFET IEVKRKLSRD SHVRRPFFRI PPSAVERLRE VFAENELPSR TVKENLSKEL  540
GLDPGKVSKW FKNARYLALK SRKAGTELCN SSTKILREPR LDDMKEQTAD LMELNNALME  600
TSICKLQNSN QVFQRKDPKS LSSSLEKNEW ERASIGSPSK SNKINVEYSD DMSLKNLLKS  660
KTKRGKRRSN SMSATMSQVA EAEMERLCRA KIRLESMKQK LQGLQTGKSR KSNKNQLRQE  720
SVIFVPIAEI REKV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136144RRNKRRRKE
2461466RKRREK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G158300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021592703.10.0pathogenesis-related homeodomain protein
RefseqXP_021592704.10.0pathogenesis-related homeodomain protein
SwissprotP487851e-160PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A2C9UM350.0A0A2C9UM35_MANES; Uncharacterized protein
STRINGcassava4.1_031748m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-155pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]