PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G102400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CO-like
Protein Properties Length: 451aa    MW: 50663.7 Da    PI: 6.2761
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G102400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.92.4e-091559240
             zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         ++r C+ + + ++++fC  ++ +lC+ C ++ H+       H++v
  Manes.14G102400.1.p 15 KARACDSCIKRRARWFCAADDAFLCQACDSSVHSAnplarrHERV 59
                         5789*****************************667888888876 PP
2CCT67.92.6e-23395438144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Manes.14G102400.1.p 395 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 438
                          9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.1631461IPR000315B-box-type zinc finger
SMARTSM003368.6E-121461IPR000315B-box-type zinc finger
PfamPF006432.4E-71559IPR000315B-box-type zinc finger
CDDcd000212.35E-101761No hitNo description
PfamPF062037.7E-18395437IPR010402CCT domain
PROSITE profilePS5101716.083395437IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MISDKNVANA IGGKKARACD SCIKRRARWF CAADDAFLCQ ACDSSVHSAN PLARRHERVR  60
LKTVSLKHLD IVPKENYVPS WHRGFTRKAR TPRCGKPASH SKFEEKLRNS IPLVPEGSDE  120
ISHEENEEEH LLYRVPIFEP FASQLCISTT ISNNEAETSA AAADVSDQTV ADANGIESKA  180
SFGSRGEDIG SLQRFFQSDM DFAEFDADVE SLLGRGLENE SFGMEELGLV ESKEEELQRE  240
YYQGRGKVKL EEEEAGAEKK AARDYRVDTD IEMARELPFE LSFNYDSATC GEEDEKLLGT  300
QNRDLNNKED GENLKKKKKR KILLQLDYEA VITAWASQGC PWTTGNGPDV DPEECWQECC  360
MVIKGISGAE IDDHGYGDHT SGVGVQQPAT ANGGREARVS RYREKRRTRL FSKKIRYEVR  420
KLNAEKRPRM KGRFVKRASF ATPAFPLRTT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1314320KKKKKRK
2315320KKKKRK
3405421RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G102400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634228.10.0zinc finger protein CONSTANS-LIKE 6-like isoform X1
TrEMBLA0A2C9UK370.0A0A2C9UK37_MANES; Uncharacterized protein
STRINGcassava4.1_028584m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-86B-box type zinc finger protein with CCT domain