PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.14G099100.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bZIP

Protein Properties

Length: 457aa MW: 50425.7 Da PI: 6.6575

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.14G099100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.4	4e-10	173	211	5	43
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 k rr+++NReAAr+sR+RKka++++Le L + + Manes.14G099100.1.p 173 KTLRRLAQNREAARKSRLRKKAYVQQLESSRHRLAQLEQ 211 788************************975544444433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-6	169	260	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.461	171	215	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.3E-7	172	214	No hit	No description
Pfam	PF00170	3.0E-7	173	212	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.99E-7	173	216	No hit	No description
CDD	cd14708	2.24E-22	173	225	No hit	No description
PROSITE pattern	PS00036	0	176	191	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.4E-31	255	328	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MQSFKHFPLP EMYCHSSFFL RGEDGSRNQT RFADLGELEQ PAPAFHHDDA VDLSPSSMFS 60 LKSGNVAVLS SNLQYDAVLN TSIGSAEIAT TGTGCLDTGQ YMYHKGTTIA SSLGNAHCIE 120 NWGDSGMADN SQQTDTSTDV DTDDRNQLHG VQHGTVMVVD SMEKSKAKAG DQKTLRRLAQ 180 NREAARKSRL RKKAYVQQLE SSRHRLAQLE QELQRARQQG IFVASGLSGD HGAGNGAVAF 240 NMDYARWLEE HQRLISDLRS AVNSHMGDNE LHVLVDAVMS HYDEIFRLKS IGTKADVFHM 300 LSGMWKTPAE RCFMWLGGFR SSELLKILGN HLEPLTDQQL MGICNLQQSS QQAEDALSQG 360 MEALQQSLVE TVSSTSLGPA GSGKVADYMG QMAIAMGKLA TLENFIHQAD LLRQQTLQQM 420 NRILTTRQAA RALLVISDYT SRLRALSSLW LARPRD*

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MQSFKHFPLP EMYCHSSFFL RGEDGSRNQT RFADLGELEQ PAPAFHHDDA VDLSPSSMFS  60
LKSGNVAVLS SNLQYDAVLN TSIGSAEIAT TGTGCLDTGQ YMYHKGTTIA SSLGNAHCIE  120
NWGDSGMADN SQQTDTSTDV DTDDRNQLHG VQHGTVMVVD SMEKSKAKAG DQKTLRRLAQ  180
NREAARKSRL RKKAYVQQLE SSRHRLAQLE QELQRARQQG IFVASGLSGD HGAGNGAVAF  240
NMDYARWLEE HQRLISDLRS AVNSHMGDNE LHVLVDAVMS HYDEIFRLKS IGTKADVFHM  300
LSGMWKTPAE RCFMWLGGFR SSELLKILGN HLEPLTDQQL MGICNLQQSS QQAEDALSQG  360
MEALQQSLVE TVSSTSLGPA GSGKVADYMG QMAIAMGKLA TLENFIHQAD LLRQQTLQQM  420
NRILTTRQAA RALLVISDYT SRLRALSSLW LARPRD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.14G099100.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021634532.1	0.0	transcription factor TGA2.3
Swissprot	Q9SX27	0.0	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A2C9UKJ4	0.0	A0A2C9UKJ4_MANES; Uncharacterized protein
STRING	cassava4.1_007351m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6022	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-163	bZIP family protein

Link Out ? help Back to Top
Phytozome	Manes.14G099100.1.p

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]