PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G098300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 293aa    MW: 32615.1 Da    PI: 6.3111
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G098300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05110129120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++C  C+k+F+r  n++ H+
  Manes.14G098300.1.p 110 FSCAVCNKTFNRYNNMQMHM 129
                          89*****************9 PP
2zf-C2H2163.4e-05195217123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C +Cgk+F  + + ++H +++
  Manes.14G098300.1.p 195 FECRKCGKPFAVRGDWRTHEKNC 217
                          89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.57E-5106131No hitNo description
Gene3DG3DSA:3.30.160.601.5E-5110129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.221110137IPR007087Zinc finger, C2H2
SMARTSM003550.34110132IPR015880Zinc finger, C2H2-like
PfamPF128741.0E-4110129No hitNo description
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
SMARTSM00355200158190IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.92E-6178215No hitNo description
Gene3DG3DSA:3.30.160.602.4E-5181215IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035560195215IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.6195215IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MQTPSFTCIS SSESVCIEAD DQEVDEDSLF LSLGPPGQNI TRYPNSRPSL NNKQKIDENP  60
TTQSGVTVAL HIGPPTIGAS ASNPNHIGSL VEGQYWIPSP AQILVGPTQF SCAVCNKTFN  120
RYNNMQMHMW GHGSQYRKGP ESLRGTKQGS SMLRLPCYCC AEGCKNNIDH PRSRPLKDFR  180
TLQTHYKRKH GAKPFECRKC GKPFAVRGDW RTHEKNCGKL WFCICGSDFK HKRSLKDHVR  240
AFGDGHAPHT VEICENEEEG GEDDDDDDDE DEEENNNADQ GDNRGGHGPL FF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G098300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634379.10.0zinc finger protein WIP6-like
SwissprotQ9FX681e-122ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2C9UKI70.0A0A2C9UKI7_MANES; Uncharacterized protein
STRINGcassava4.1_026292m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-124C2H2-like zinc finger protein