PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.14G090700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 338aa MW: 37588.5 Da PI: 6.1799

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.14G090700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.5	1.6e-15	55	104	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P++ ++K + a+ L +++eY++ Lq Manes.14G090700.1.p 55 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFLLEVIEYVQFLQ 104 899***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.3E-22	51	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-18	52	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.942	53	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.27E-14	55	108	No hit	No description
Pfam	PF00010	8.1E-13	55	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-12	59	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MRGKGNQNQD DEEYEDEDFR SRKDGLSANL TSNNSNSNVN INKDGKNIDK TNVIRSKHSV 60 TEQRRRSKIN ERFQILRDLI PHSDQKRDTA SFLLEVIEYV QFLQEKVQKY EGSYQGWSSE 120 PTKLIPWRNS HWRVQSFIGH PQAIKNDSGR GPTFDENNIT INPTMLTGTQ RQGQSDPSRD 180 VTCKAAEQLP ELANKVMPVP MSLQTTIPNT VQSDCLVAHP FGLPVSDAQS ADFSITNDTM 240 NQQEELTIEG GTISISSVYS QGLLSNLTQA LQNAGVDLSQ ANISVKIDLG KRANRGLTSE 300 TSTKDPQSPP SSNQAMTHLR DGSCGEDPDH SQKRLKM*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.14G090700.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021633886.1	0.0	transcription factor BIM2-like
Refseq	XP_021633887.1	0.0	transcription factor BIM2-like
Refseq	XP_021633888.1	0.0	transcription factor BIM2-like
Swissprot	Q9CAA4	1e-104	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A251JBR6	0.0	A0A251JBR6_MANES; Uncharacterized protein
STRING	cassava4.1_011260m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1730	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	2e-97	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Manes.14G090700.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]