PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G086500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family TCP
Protein Properties Length: 388aa    MW: 43276 Da    PI: 7.7547
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G086500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP92.68.4e-29521933126
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssasecea 75 
                          g+kdrhsk++T +g+RdRR+Rls+++a +++dLqd+LG+ ++sk i+WL+ + k  i++l+ +                 s +++s+   
  Manes.14G086500.1.p  52 GGKDRHSKVCTVKGLRDRRIRLSVPTAVQLYDLQDRLGLSQPSKVIDWLIDATKDDIDKLPPLvmpqgfgqfvhpqhmllSHEPNSSL-- 139
                          79*************************************************************8877777666666655533333222.. PP

                  TCP  76 esssssasnsssg......................kaaksaa.kskksqksaasalnlakesrakarararert 126
                                                                +s+  ++++++  +++ ++ a+ s  +       r+
  Manes.14G086500.1.p 140 ------------VpnffdansasykdggfyslginI--NSSLdENHRETVAKSKYWEAAEASARSG------RS 193
                          ............122222111222222233333321..2222111111111222222222222223......33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.75953111IPR017887Transcription factor TCP subgroup
PfamPF036341.1E-2653198IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MSRSSREKDF QAKQEVCAAD DNKFTKAVPS TSSRQWSAFR NPRIVRVSRS FGGKDRHSKV  60
CTVKGLRDRR IRLSVPTAVQ LYDLQDRLGL SQPSKVIDWL IDATKDDIDK LPPLVMPQGF  120
GQFVHPQHML LSHEPNSSLV PNFFDANSAS YKDGGFYSLG ININSSLDEN HRETVAKSKY  180
WEAAEASARS GRSNEVERIV EKGKWIKTNE QENQGGFSNY NPPEQASAQM FFPLTSSSHS  240
SLPGLPNNPL PFNPYYHWDA SNLSLSHQFP TPGFQTQTET SLSNNVPLPS SSQSPFSSAS  300
QFFLCPQVTM PSLFPQYPPY ATTHIENESR EINHFQLLSS GSQHILPSSR ATSLPMKNLS  360
LTVNPGFAQS HQSKNVRQPD EEDNPDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-1958112155Putative transcription factor PCF6
5zkt_B8e-1958112155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G086500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634740.10.0transcription factor TCP17-like
TrEMBLA0A2C9ULX40.0A0A2C9ULX4_MANES; Uncharacterized protein
STRINGcassava4.1_032280m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-49TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5