PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G083200.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 412aa    MW: 45218.9 Da    PI: 8.2718
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G083200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.86.3e-16199244555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ Er+RRdriN+++  L++l+P+a      K +Ka++L +++eY+k+Lq
  Manes.14G083200.2.p 199 HNQSERKRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 244
                          9************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-19191255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-18192254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.6194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-13199244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.34E-17199248No hitNo description
SMARTSM003532.8E-17200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MGFSSRSNYY EVAELTWENG QLAMHGLGGL LHSDQGTKAT TTWGRTSETL ESIVHQATRH  60
SSPQKINSKQ QGQAKIASAV ESSDGKWAET SSGHQAQMAP LLLKKRARSE SNQCGSSRDH  120
EQVDRSACAS ASPTFCRESD TTMMTYASFE STPSFKAKTT DNEDSASHGG SENPDEDRET  180
KTERVRSHSS RRSRAAAIHN QSERKRRDRI NQKMKALQKL VPNASKTDKA SMLDEVIEYL  240
KQLQAQVQVM SVRNMPQMMM SPLGMHQHFH QMSLLARMGM GVTHLGMGMG MLHDINTIGH  300
ATATPPHSLP PLLHPPPPST TPAASFVPPP HPHPFVVLPA ANPDTANSSS VPLPDPYCGF  360
LAQSMNMDLY NKMAALYQQQ MMNQQMTQAA PQPNHVQGSC LPWQEPLEAA R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102108LKKRARS
2202207ERKRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G083200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593102.10.0transcription factor PIF7 isoform X3
TrEMBLA0A2C9UL330.0A0A2C9UL33_MANES; Uncharacterized protein
STRINGcassava4.1_034399m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.15e-42bHLH family protein