PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G080600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 450aa    MW: 49554.8 Da    PI: 4.8319
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G080600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.8e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT++Ed++l+ +++++G g W+t +++ g+ R++k+c++rw +yl
  Manes.14G080600.1.p 14 KGAWTADEDQKLIAYIQEHGVGGWRTLPQKAGLQRCGKSCRLRWANYL 61
                         79********************************************97 PP
2Myb_DNA-binding58.31.7e-1867112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg ++teE+++++++++ lG++ W++Iar+++ +Rt++++k++w+++l
  Manes.14G080600.1.p  67 RGEFSTEEEQQIIQLHASLGNR-WSAIARHLP-KRTDNEIKNYWNTHL 112
                          899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-23564IPR009057Homeodomain-like
PROSITE profilePS5129415.094961IPR017930Myb domain
SuperFamilySSF466892.09E-2911108IPR009057Homeodomain-like
SMARTSM007171.3E-111363IPR001005SANT/Myb domain
PfamPF002492.8E-141461IPR001005SANT/Myb domain
CDDcd001671.42E-91661No hitNo description
PROSITE profilePS5129426.55262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2665116IPR009057Homeodomain-like
SMARTSM007173.1E-1866114IPR001005SANT/Myb domain
PfamPF002499.9E-1767112IPR001005SANT/Myb domain
CDDcd001671.48E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MGRTPCCNEA GLKKGAWTAD EDQKLIAYIQ EHGVGGWRTL PQKAGLQRCG KSCRLRWANY  60
LRPDIKRGEF STEEEQQIIQ LHASLGNRWS AIARHLPKRT DNEIKNYWNT HLKKRLVDMG  120
NDPVTHNQIS PSPTSSSSVD NPGSVGEQRS DSQIKPIQRS ISTSTKLINK VSAKFAQMQR  180
KEIATKVLTP SPSLDAIKAV LLNSTKDTIT FRGCTRRDDG GSGGDGDDID VEIIASRPVS  240
CSSSSRILNK MATKLKPSKN LDLLKDRLSV PSKQSMASTS TGSDTSAAGG SYNNIESPIS  300
ISDFLESLPT SSSACESSEF TGNLNMGDDQ VNEALAAFHQ AMELETTTTP ESPMYTPYEL  360
EEFLENYGGD GEDHGATFTN DVNQSKACDS QVATSMEPTT DFIQQFTNMP FDCRDNEYST  420
TKCYFYGEEE SNGGDLEVNM NYWNEDYGW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-27121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G080600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021591848.10.0transcription factor MYB28-like
TrEMBLA0A2C9UJU50.0A0A2C9UJU5_MANES; Uncharacterized protein
STRINGcassava4.1_027220m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-74myb domain protein 16