PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.14G079700.3.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

M-type_MADS

Protein Properties

Length: 359aa MW: 40789.9 Da PI: 6.931

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.14G079700.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	77.7	8.8e-25	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRrngilKKA+ELS+LCd+++a+++fs+tg+ Manes.14G079700.3.p 9 KRLESTSNRQVTYSKRRNGILKKAKELSILCDIDIALLMFSPTGR 53 689****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.2E-32	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	26.016	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.35E-27	2	95	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.71E-30	2	75	No hit	No description
PRINTS	PR00404	1.6E-20	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-21	11	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-20	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-20	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MGRVKLKIKR LESTSNRQVT YSKRRNGILK KAKELSILCD IDIALLMFSP TGRPTLYQGE 60 HSSVEGVIAK FTQLTPQERA KRKLESLEVL RKTFKKLDHD VNIQDFLGAR TQTFEELTDQ 120 VRLLQTQLTE LHNRMSYWSN PGKVDSIERL SQMEDSLKES INQIRLQKES FGKCQLMPVE 180 CNSQFQNGMA LPLMMNNMQE AQSLSWLPNN GNHHLILSNE QNFFPQSDIE CSTDASLPDY 240 SGYNDTGKHT EIQIRGPLDN IGQDGGALSN LSSNKCLSVQ LNEQFSYSPF SSLNLPDVGK 300 MKPEMQMNCQ GNNSVYRVNN NFEPPRPIYD NVQHNWGSAS GPCSIEMFNE NQYHQQSN*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MGRVKLKIKR LESTSNRQVT YSKRRNGILK KAKELSILCD IDIALLMFSP TGRPTLYQGE  60
HSSVEGVIAK FTQLTPQERA KRKLESLEVL RKTFKKLDHD VNIQDFLGAR TQTFEELTDQ  120
VRLLQTQLTE LHNRMSYWSN PGKVDSIERL SQMEDSLKES INQIRLQKES FGKCQLMPVE  180
CNSQFQNGMA LPLMMNNMQE AQSLSWLPNN GNHHLILSNE QNFFPQSDIE CSTDASLPDY  240
SGYNDTGKHT EIQIRGPLDN IGQDGGALSN LSSNKCLSVQ LNEQFSYSPF SSLNLPDVGK  300
MKPEMQMNCQ GNNSVYRVNN NFEPPRPIYD NVQHNWGSAS GPCSIEMFNE NQYHQQSN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_R	2e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_S	2e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_A	2e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_B	2e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_C	2e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_D	2e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_E	2e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_F	2e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.14G079700.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021592961.1	0.0	agamous-like MADS-box protein AGL65 isoform X2
Swissprot	Q7X9I0	1e-104	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A251JS41	0.0	A0A251JS41_MANES; Uncharacterized protein
STRING	cassava4.1_024549m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-107	AGAMOUS-like 65

Link Out ? help Back to Top
Phytozome	Manes.14G079700.3.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]