PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.14G079000.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Dof

Protein Properties

Length: 476aa MW: 51877.6 Da PI: 6.8307

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.14G079000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.9	1.2e-39	123	183	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+s Manes.14G079000.1.p 123 PDKLLPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 183 78999*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	116	180	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-32	125	181	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.826	127	181	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	129	165	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MQENNSKDPA IRLFGKKIPL NSDGDLPQIS DEDLASSEKV EEVENEEKSE KDFPSGKFSD 60 TSGEDDASVQ DTEESADPET SPDTNVNPKT PSIDEDSAKS KTSKTDKEQN DSSNKQEKTL 120 KKPDKLLPCP RCNSMDTKFC YYNNYNINQP RHFCKACQRY WTAGGTMRNV PVGAGRRKNK 180 NSASHYHHIT ISEALQAARI EAPNGTHNPA LKTNGRVLSF GLDAPICDSM ASVLNLADKK 240 VLNGTRNGFH NIEEQRIPVS CKGRENGDDC SSGSSVTVSS SMGEGGRTCS QEPFMQRING 300 FASPIPCLPG VPWPYPWNSA LPPPAFCPPG FPMPFYPPFW NCGIPGGWSI PLVSPQSSSS 360 LSSQKASSNP SSPLGKHSRD GDTLKPDDLE KEEPAKHRNG RVLVPKILRI DDPTEAAKSS 420 IWATLGIKNE SFNGGGLFKA FQPKRDEKKH VPETSSVLRA NPAALSRSIN FHESS*

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MQENNSKDPA IRLFGKKIPL NSDGDLPQIS DEDLASSEKV EEVENEEKSE KDFPSGKFSD  60
TSGEDDASVQ DTEESADPET SPDTNVNPKT PSIDEDSAKS KTSKTDKEQN DSSNKQEKTL  120
KKPDKLLPCP RCNSMDTKFC YYNNYNINQP RHFCKACQRY WTAGGTMRNV PVGAGRRKNK  180
NSASHYHHIT ISEALQAARI EAPNGTHNPA LKTNGRVLSF GLDAPICDSM ASVLNLADKK  240
VLNGTRNGFH NIEEQRIPVS CKGRENGDDC SSGSSVTVSS SMGEGGRTCS QEPFMQRING  300
FASPIPCLPG VPWPYPWNSA LPPPAFCPPG FPMPFYPPFW NCGIPGGWSI PLVSPQSSSS  360
LSSQKASSNP SSPLGKHSRD GDTLKPDDLE KEEPAKHRNG RVLVPKILRI DDPTEAAKSS  420
IWATLGIKNE SFNGGGLFKA FQPKRDEKKH VPETSSVLRA NPAALSRSIN FHESS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.14G079000.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021592469.1	0.0	cyclic dof factor 3-like isoform X1
Swissprot	Q8LFV3	1e-123	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A2C9UJG0	0.0	A0A2C9UJG0_MANES; Uncharacterized protein
STRING	cassava4.1_006801m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-100	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Manes.14G079000.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]