PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G065600.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Dof
Protein Properties Length: 292aa    MW: 32163.1 Da    PI: 7.6875
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G065600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.63.8e-402785361
               zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                         ++alkcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+
  Manes.14G065600.2.p 27 DQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKV 85
                         799******************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-282484IPR003851Zinc finger, Dof-type
PfamPF027018.8E-342784IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.1893084IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103268IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010067Biological Processprocambium histogenesis
GO:0010087Biological Processphloem or xylem histogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDSSSPSGDM LTCSRPLIER RLRPQLDQAL KCPRCDSTHT KFCYYNNYSL SQPRYFCKTC  60
RRYWTKGGTL RNIPVGGGCR KNKKVAKKSN DQTINQNPGS SSSSSHNPTD LHLSFPEVQL  120
AHLSNILATH QGALANPTFM ETKYNIGMLE NPRPVDFMES KLEAIVGSSR NYDFMGNGEM  180
GMVSGLGDMS HQGLAPNFHG ICSPFGISVD GNNGTFMETC QRLMLPYDHQ GNNDEQNTID  240
VKPNTKLLAL EWQDQACTDG GKDTFGYLNN LGSWTGMMNG YGSSTTTNPL V*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00580DAPTransfer from AT5G62940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G065600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634460.10.0dof zinc finger protein DOF5.6-like isoform X1
RefseqXP_021634461.10.0dof zinc finger protein DOF5.6-like isoform X2
TrEMBLA0A2C9UJE60.0A0A2C9UJE6_MANES; Uncharacterized protein
TrEMBLA0A2C9UKJ80.0A0A2C9UKJ8_MANES; Uncharacterized protein
STRINGcassava4.1_012138m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.15e-53Dof family protein