PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.14G064900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB | ||||||||
Protein Properties | Length: 431aa MW: 49357.5 Da PI: 7.0726 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.4 | 1.7e-18 | 177 | 223 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd ll+++v+q+G + W+ Iar+++ gR +kqc++rw+++l Manes.14G064900.1.p 177 KGQWTIEEDRLLAQLVEQYGLRKWSHIARMLP-GRIGKQCRERWHNHL 223 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 53.2 | 6.9e-17 | 231 | 271 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W+++Ed+ l++a+++ G++ W+ Ia++++ gRt++++k++w+ Manes.14G064900.1.p 231 IWSEDEDKVLIQAHAEIGNK-WAEIAKRLP-GRTENSIKNHWN 271 6*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 29.205 | 172 | 227 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.62E-31 | 174 | 270 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-16 | 176 | 225 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-17 | 177 | 223 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-27 | 178 | 231 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.85E-15 | 180 | 223 | No hit | No description |
PROSITE profile | PS51294 | 20.086 | 228 | 278 | IPR017930 | Myb domain |
SMART | SM00717 | 9.1E-16 | 228 | 276 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 232 | 271 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.72E-12 | 232 | 274 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-21 | 232 | 276 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MFISDNQSIK PSIKNGFPFE LPSLPSKGFL EDFHHFDQFY ANGLSLNPSF GVQSGCNFNS 60 FDAFPYGSST NMDFYDYECK PFADTNGGHG QVMDNFQSGR YLNLPESNPT DMMVSNQNNN 120 MSLNFQEVKP INFLVPDEVS CVSANHEYHK KVGLNKNRAS PSARRTWKGC KKNNLVKGQW 180 TIEEDRLLAQ LVEQYGLRKW SHIARMLPGR IGKQCRERWH NHLRPDIKKD IWSEDEDKVL 240 IQAHAEIGNK WAEIAKRLPG RTENSIKNHW NATKRRQYSK RKCRSKYPRG SLLQEYIKSL 300 NLDSVPGRYQ GTIKLKAKSS AAIDTTAVNM KARNQLQPQA ASNVFPNDNR SVPNCYDFNE 360 VPDFDFDEKL FQEGCSFDSL LDEIANCDHV VDEKSFEQMD AAVEDVNPLF MDFEVKKELD 420 LVEMISQSKM * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 4e-45 | 175 | 277 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 4e-45 | 175 | 277 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.14G064900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034639 | 9e-75 | KM034639.1 Jatropha curcas clone JcMYB019 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021592162.1 | 0.0 | transcription factor MYB98-like | ||||
Swissprot | Q9S7L2 | 2e-99 | MYB98_ARATH; Transcription factor MYB98 | ||||
TrEMBL | A0A2C9UKE5 | 0.0 | A0A2C9UKE5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_023016m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1570 | 31 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 1e-102 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | Manes.14G064900.1.p |
Publications ? help Back to Top | |||
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