PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G055800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 497aa    MW: 55809.6 Da    PI: 5.5041
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G055800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH43.17.1e-14153175426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          e C+++++tGtCk+G++CkF+H+
  Manes.14G055800.1.p 153 EDCSYYMKTGTCKFGSNCKFNHP 175
                          89********************9 PP
2zf-CCCH31.82.5e-10198223227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++ +C++++rtG CkyG  C+++H++
  Manes.14G055800.1.p 198 GQTECKYYLRTGGCKYGKACRYNHSR 223
                          6789********************95 PP
3zf-CCCH39.77.8e-13251275226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C++++r+G CkyG++C+F+H+
  Manes.14G055800.1.p 251 GEKECPYYMRNGSCKYGANCRFNHP 275
                          7899********************9 PP
4zf-CCCH30.94.7e-10385411127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+++++tG Ck+ ++Ck++H++
  Manes.14G055800.1.p 385 PGQPECSYYLKTGDCKFRSNCKYHHPK 411
                          5789*********************96 PP
5zf-CCCH33.47.4e-11435456526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C++++r+G+Ck+G+ CkF H+
  Manes.14G055800.1.p 435 ICSYYSRYGICKFGPACKFDHP 456
                          7********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.1E-6148177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.084149177IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-7149176IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-11153175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5155174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577196224IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5196223IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-8198223IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6199225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-5202223IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.324249277IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-7249276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6251276IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-10251275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5255274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.08384412IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-4384411IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-6386411IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5388413IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6428456IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.967430458IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-6430457IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-8435456IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MDYSEPSNFL TDTADTNPKF GFQSSLPSSN ADPGSDQTLE LRKELEKKQL YLKEGKGENE  60
EAEPDMVVVE KVYEELEKQL HLKEVEEDNH SIEWNQNDDF NCGESHDGEE GLNKYDKEDD  120
GNDDEKYDDE VEKRDERSNG NRRHHYPVRP EAEDCSYYMK TGTCKFGSNC KFNHPVRRKN  180
QATKEKLKER EEAIERPGQT ECKYYLRTGG CKYGKACRYN HSRAKTPVLP AKAAVFPVLD  240
LNFLGLPIRP GEKECPYYMR NGSCKYGANC RFNHPDPTAA GGTDPPSGFG NGGTAALQSS  300
PQSSVAPWSS PRGLSEAAPF MPMMFPPTQG VPSQSPEWNG YQAPIYPQER SMHPTSAFVM  360
SNTATDTNVY VHQQQTPFDE FPERPGQPEC SYYLKTGDCK FRSNCKYHHP KNQIPKSSPC  420
PLSDKGLPLR PGQHICSYYS RYGICKFGPA CKFDHPIHPA AMTGSAEDQA HQDLAREESR  480
ISETGNETDT AIQQAV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G055800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021592031.10.0zinc finger CCCH domain-containing protein 43-like isoform X1
SwissprotQ9STM41e-140C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A2C9UKY40.0A0A2C9UKY4_MANES; Uncharacterized protein
STRINGcassava4.1_006776m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-130C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]