PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G054900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 524aa    MW: 58267.5 Da    PI: 6.1619
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G054900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS378.86.5e-1161515221374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevs 88 
                          lv+lL++cAeav+ +d++ a++lL++l+ +a   g+++qR+a++f+++La rl+  ++     +++s  + ++  s+++  al+l +e++
  Manes.14G054900.1.p 151 LVQLLIACAEAVACRDKSHASTLLSELRRNALVFGSSFQRVASCFVQGLADRLSLVQPLGTVGFTASMMNIMDisSDKKEEALSLVYEIC 240
                          689**************************************************98555444445555555555658888899999***** PP

                 GRAS  89 PilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelg 173
                          P ++f+h++aN+ Ilea+ege+ vH++D++++    +G QW  L+q+LasR+++pp +lRiTgvg        + +++g+ L ++A+elg
  Manes.14G054900.1.p 241 PHIQFGHFVANSSILEAFEGESFVHVVDLGMTlglpHGHQWRQLIQSLASRAGKPPrRLRITGVGL----CVGRFQTIGDELVEYAKELG 326
                          ****************************98873333788*************887779********....******************** PP

                 GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                          +++ef+v v+++le+l+ ++++v  gE+l+Vn++lqlh +++es    +   +vL+++  lsPkv+v+veq+++hn++ Fl rf+eal+y
  Manes.14G054900.1.p 327 INLEFSV-VESNLENLRRDDIKVFDGEVLVVNSILQLHCVVKESRGALN---SVLQIIHALSPKVLVLVEQDSSHNGPFFLGRFMEALHY 412
                          ******9.7********************************88877777...8************************************* PP

                 GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352
                          ysa+fdsl++ lpr +  r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+++p++  +++qakl l+k k  +gy+v 
  Manes.14G054900.1.p 413 YSAIFDSLDTMLPRYDTRRAKMEQFYFAEEIKNIVSCEGPARVERHEKMDQWRRRMSRAGFQAAPIK--MMAQAKLWLAKNKvCEGYTVA 500
                          *****************************************************************96..789**********9******* PP

                 GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                          ee+g+lvlgWk++p++++S+W+
  Manes.14G054900.1.p 501 EEKGCLVLGWKSKPIIAASCWK 522
                          *********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.706125503IPR005202Transcription factor GRAS
PfamPF035142.2E-113151522IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MAPSLFSCDF SENETMGSIS SLDLSLSAMA YYPYLYLPTL ENNASICILP FSEDIREHKR  60
IKRTLSSAES LGSNNNGFYC AGSGNSDCSS ISRSNSSNSL NSLPRLHFRD HIRTYTQRYL  120
AAEAIEEATE AMENTDEGGD EEDGSTDGMR LVQLLIACAE AVACRDKSHA STLLSELRRN  180
ALVFGSSFQR VASCFVQGLA DRLSLVQPLG TVGFTASMMN IMDISSDKKE EALSLVYEIC  240
PHIQFGHFVA NSSILEAFEG ESFVHVVDLG MTLGLPHGHQ WRQLIQSLAS RAGKPPRRLR  300
ITGVGLCVGR FQTIGDELVE YAKELGINLE FSVVESNLEN LRRDDIKVFD GEVLVVNSIL  360
QLHCVVKESR GALNSVLQII HALSPKVLVL VEQDSSHNGP FFLGRFMEAL HYYSAIFDSL  420
DTMLPRYDTR RAKMEQFYFA EEIKNIVSCE GPARVERHEK MDQWRRRMSR AGFQAAPIKM  480
MAQAKLWLAK NKVCEGYTVA EEKGCLVLGW KSKPIIAASC WKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-6015852125377Protein SCARECROW
5b3h_D6e-6015852125377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G054900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634599.10.0DELLA protein RGL1-like
TrEMBLA0A2C9UK310.0A0A2C9UK31_MANES; Uncharacterized protein
STRINGcassava4.1_031685m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-80RGA-like 1