PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.14G052700.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | Trihelix | ||||||||
Protein Properties | Length: 737aa MW: 81964.7 Da PI: 8.218 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 69 | 9.3e-22 | 641 | 724 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +ev+ Li++r ++++r+ k +++lWee+s+++ ++gf+r+p qCk+ w +l ++y+ ++e++++++s+++ +pyf++++ Manes.14G052700.3.p 641 KWKPEEVKRLIKMRGDLHDRFHVVKGRMALWEEISENLIAEGFNRTPGQCKSLWASLVQKYEHEQENASDEKSRKV--WPYFEDMD 724 7********************************************************************9765555..*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.60.15.10 | 1.2E-37 | 9 | 180 | IPR001279 | Metallo-beta-lactamase |
SuperFamily | SSF56281 | 4.64E-44 | 15 | 345 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF07521 | 6.4E-6 | 286 | 317 | IPR011108 | Zn-dependent metallo-hydrolase, RNA specificity domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-6 | 633 | 700 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.397 | 634 | 698 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 2.5E-18 | 639 | 726 | No hit | No description |
CDD | cd12203 | 6.60E-20 | 640 | 702 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0060918 | Biological Process | auxin transport | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 737 aa Download sequence Send to blast |
MDTKITLVIP ALDSRTPIYA SSFTMELIKK RLKENGIFVY SRLKVFRTRK KFIAGPFEVE 60 PIRVTHSIPD CCGLVLRCDD GTILHTGDWK IDESPLDGKV FDREALEELS KEGVTLMMSD 120 STNVLSPGRT ISESVVADAL MRRISAAKGR VITTQFASNI HRLGSVKAAA DLTGRKLVFV 180 GMSLRTYLDA AWKDGKAPID PSTLVKVEDI DAYAPKDLLI VTTGSQAEPR AALNLASYGS 240 SHSFKLSKED LILYSAKVIP GNESRVMKML NRISDIGSTI IMGKNELLHT SGHGYRGELE 300 EILRIVKPQH FLPIHGELLF LKEHELLGKS TGIGHTTVIK NGEMLGVSHL RNRRVISNGF 360 ISLGKENLQL MYSDGDKAFG TSAELCVDER LRIATDGIIV VSMEILRPQN SESLIENTIK 420 GKIRITTRCL WLDKGKLLDA LHKAAHAALS SCPVNCPLSH MEKMVSEVLR KMVRKYSGKR 480 PEVIAIAMEN PAGVLSDEIK TRLSGNSHIG VGISSLKKVV DGYPKKNRSN KTQEESNGYM 540 HLDNTSQRNL EVDDIQVGRL PVNEETTTST SSLADSLPSD SEDQDDFWKS FVSPSSPVDN 600 LVPQQENVNE LKEDGSMSSD DNSSTVQNSQ SKPSKRVKRN KWKPEEVKRL IKMRGDLHDR 660 FHVVKGRMAL WEEISENLIA EGFNRTPGQC KSLWASLVQK YEHEQENASD EKSRKVWPYF 720 EDMDKILSGF EATSTK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5a0t_A | 3e-61 | 17 | 489 | 104 | 560 | RIBONUCLEASE J |
5a0t_B | 3e-61 | 17 | 489 | 104 | 560 | RIBONUCLEASE J |
5a0v_A | 3e-61 | 17 | 489 | 104 | 560 | RIBONUCLEASE J |
5a0v_B | 3e-61 | 17 | 489 | 104 | 560 | RIBONUCLEASE J |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.14G052700.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:25871650}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021591758.1 | 0.0 | uncharacterized protein LOC110599606 isoform X5 | ||||
Swissprot | Q84W56 | 0.0 | RNJ_ARATH; Ribonuclease J | ||||
TrEMBL | A0A2C9UK02 | 0.0 | A0A2C9UK02_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_001533m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63420.1 | 0.0 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.14G052700.3.p |
Publications ? help Back to Top | |||
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