PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.14G052700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | Trihelix | ||||||||
Protein Properties | Length: 912aa MW: 101152 Da PI: 8.6972 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 64.6 | 2.1e-20 | 819 | 899 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +ev+ Li++r ++++r+ k +++lWee+s+++ ++gf+r+p qCk+ w +l ++y++ + ek+r + +pyf++++ Manes.14G052700.1.p 819 KWKPEEVKRLIKMRGDLHDRFHVVKGRMALWEEISENLIAEGFNRTPGQCKSLWASLVQKYEENASDEKSR-----KVWPYFEDMD 899 7**************************************************************99999986.....45*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.60.15.10 | 1.7E-69 | 108 | 358 | IPR001279 | Metallo-beta-lactamase |
SuperFamily | SSF56281 | 4.79E-72 | 109 | 523 | IPR001279 | Metallo-beta-lactamase |
SMART | SM00849 | 2.3E-25 | 121 | 318 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF00753 | 5.6E-11 | 122 | 267 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF07521 | 8.3E-6 | 464 | 495 | IPR011108 | Zn-dependent metallo-hydrolase, RNA specificity domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-6 | 811 | 878 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.397 | 812 | 876 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 9.2E-18 | 817 | 901 | No hit | No description |
CDD | cd12203 | 1.92E-20 | 818 | 881 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0060918 | Biological Process | auxin transport | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 912 aa Download sequence Send to blast |
MYLGFLGGFS LSHSLYSGST CFAACRLKDL QNMAAFSTIS LFPNSLCGRP SPRKFSISYS 60 FRSPMTTGNH GSKASRKRSG RLEGAGKSME DSVKRKLEQF YEGSNGPPIR IIPIGGLGEI 120 GMNCMLVGNH DRYILIDAGV MFPDYDELGV QKIIPDTTFI KRWSHKIEAV VITHGHEDHI 180 GALPWVIPAL DSRTPIYASS FTMELIKKRL KENGIFVYSR LKVFRTRKKF IAGPFEVEPI 240 RVTHSIPDCC GLVLRCDDGT ILHTGDWKID ESPLDGKVFD REALEELSKE GVTLMMSDST 300 NVLSPGRTIS ESVVADALMR RISAAKGRVI TTQFASNIHR LGSVKAAADL TGRKLVFVGM 360 SLRTYLDAAW KDGKAPIDPS TLVKVEDIDA YAPKDLLIVT TGSQAEPRAA LNLASYGSSH 420 SFKLSKEDLI LYSAKVIPGN ESRVMKMLNR ISDIGSTIIM GKNELLHTSG HGYRGELEEI 480 LRIVKPQHFL PIHGELLFLK EHELLGKSTG IGHTTVIKNG EMLGVSHLRN RRVISNGFIS 540 LGKENLQLMY SDGDKAFGTS AELCVDERLR IATDGIIVVS MEILRPQNSE SLIENTIKGK 600 IRITTRCLWL DKGKLLDALH KAAHAALSSC PVNCPLSHME KMVSEVLRKM VRKYSGKRPE 660 VIAIAMENPA GVLSDEIKTR LSGNSHIGVG ISSLKKVVDG YPKKNRSNKT QEESNGYMHL 720 DNTSQRNLEV DDIQVGRLPV NEETTTSTSS LADSLPSDSE DQDDFWKSFV SPSSPVDNLV 780 PQQENVNELK EDGSMSSDDN SSTVQNSQSK PSKRVKRNKW KPEEVKRLIK MRGDLHDRFH 840 VVKGRMALWE EISENLIAEG FNRTPGQCKS LWASLVQKYE ENASDEKSRK VWPYFEDMDK 900 ILSGFEATST K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5a0t_A | 4e-86 | 109 | 667 | 19 | 560 | RIBONUCLEASE J |
5a0t_B | 4e-86 | 109 | 667 | 19 | 560 | RIBONUCLEASE J |
5a0v_A | 4e-86 | 109 | 667 | 19 | 560 | RIBONUCLEASE J |
5a0v_B | 4e-86 | 109 | 667 | 19 | 560 | RIBONUCLEASE J |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.14G052700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:25871650}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021591755.1 | 0.0 | uncharacterized protein LOC110599606 isoform X2 | ||||
Swissprot | Q84W56 | 0.0 | RNJ_ARATH; Ribonuclease J | ||||
TrEMBL | A0A2C9UJ14 | 0.0 | A0A2C9UJ14_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_001533m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5099 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63420.1 | 0.0 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.14G052700.1.p |
Publications ? help Back to Top | |||
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