PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.14G050900.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NF-YC

Protein Properties

Length: 247aa MW: 27074.5 Da PI: 5.269

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.14G050900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	179.2	3.9e-56	41	145	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtd Manes.14G050900.1.p 41 QLQMFWSYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTD 130 89***998899************************************************************************* PP NF-YC 88 ifdflvdivprdelk 102 ifdflvdivprde+k Manes.14G050900.1.p 131 IFDFLVDIVPRDEIK 145 **********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	6.87E-34	29	135	IPR009072	Histone-fold
Pfam	PF00808	1.7E-20	63	126	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	7.6E-37	64	141	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MDANSQQVQS ASYPPQPPAS GVPAPSAPTP FHHLLQQQQQ QLQMFWSYQR QEIEQVNDFK 60 NHQLPLARIK KIMKADEDVR MISAEAPILF AKACELFILE LTIRSWLHAE ENKRRTLQKN 120 DIAAAITRTD IFDFLVDIVP RDEIKDEAGL GGMVGATASG VPYYYPPIGH PAGPGPGGMM 180 IGRPAMDPTG VYVQPPSQAW QSVWQRAAAE DGSYGSGGSS GQGNLDGQGL WQSWDTVVYG 240 KTHLDF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-54	49	141	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	119	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.14G050900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021591876.1	0.0	nuclear transcription factor Y subunit C-1-like isoform X1
Swissprot	Q9SMP0	1e-108	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A2C9UIM6	0.0	A0A2C9UIM6_MANES; Uncharacterized protein
STRING	cassava4.1_034343m	1e-168	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11071	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	6e-87	nuclear factor Y, subunit C4

Link Out ? help Back to Top
Phytozome	Manes.14G050900.1.p

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]