PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G044200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LFY
Protein Properties Length: 382aa    MW: 43109.6 Da    PI: 7.3272
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G044200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY642.18e-19613661385
              FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlm 90 
                          mdpe f+aslfkwdpra + ++p+rl+e  a + +p  +a+a+  r+l +leelf+ayGvry+t+akiaelGftvstL+dmkdee+d++m
  Manes.14G044200.1.p   1 MDPEVFTASLFKWDPRALV-PAPNRLFEAVAPPLHP-GTAHAVRPRELCGLEELFQAYGVRYYTAAKIAELGFTVSTLLDMKDEEIDEMM 88 
                          9**************9765.7889999877766666.677778888899***************************************** PP

              FLO_LFY  91 kslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekk 180
                          +sls+ifr+dllvGeryGik+avraerrrleee+  ++rr+lls d+++a+dalsqeglseep+q+ekeaagsgg+g   +e++a e   
  Manes.14G044200.1.p  89 NSLSQIFRWDLLVGERYGIKSAVRAERRRLEEED--SRRRHLLSGDTTKAIDALSQEGLSEEPMQKEKEAAGSGGGG--MSEVAAGE--- 171
                          ********************************88..99999********************************9999..34444333... PP

              FLO_LFY 181 seeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkia 270
                             +k+++   +++rk +++     d d+++ e+e++e++g++g erqrehPfivtepgevargkknGLDYLf+LyeqCrefL++vq+ a
  Manes.14G044200.1.p 172 ---RKQQQ---QRRRKGQRK---VVDIDQDD-ENENDENGGAGGYERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIHVQSFA 251
                          ...22222...223333333...23444443.344566778889********************************************** PP

              FLO_LFY 271 kerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfn 360
                          k+rGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrr fkergenvGawrqacykplv+iaa+qgwdida+fn
  Manes.14G044200.1.p 252 KDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRVFKERGENVGAWRQACYKPLVNIAASQGWDIDAIFN 341
                          ****************************************************************************************** PP

              FLO_LFY 361 ahprLsiWYvPtkLrqLChlerska 385
                          ahprL+iWYvPtkLrqLCh+er++a
  Manes.14G044200.1.p 342 AHPRLAIWYVPTKLRQLCHAERNSA 366
                          **********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016986.1E-2041367IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDPEVFTASL FKWDPRALVP APNRLFEAVA PPLHPGTAHA VRPRELCGLE ELFQAYGVRY  60
YTAAKIAELG FTVSTLLDMK DEEIDEMMNS LSQIFRWDLL VGERYGIKSA VRAERRRLEE  120
EDSRRRHLLS GDTTKAIDAL SQEGLSEEPM QKEKEAAGSG GGGMSEVAAG ERKQQQQRRR  180
KGQRKVVDID QDDENENDEN GGAGGYERQR EHPFIVTEPG EVARGKKNGL DYLFHLYEQC  240
REFLIHVQSF AKDRGEKCPT KVTNQVFRYA KKAGASYINK PKMRHYVHCY ALHCLDEEAS  300
NALRRVFKER GENVGAWRQA CYKPLVNIAA SQGWDIDAIF NAHPRLAIWY VPTKLRQLCH  360
AERNSAAPSS CVSSGGDHLP F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1102053812194PROTEIN LEAFY
2vy2_A1e-1102053812194PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G044200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634810.10.0floricaula/leafy homolog
SwissprotO040640.0FLLH_POPTR; Floricaula/leafy homolog
TrEMBLA0A2C9UIR50.0A0A2C9UIR5_MANES; Uncharacterized protein
STRINGcassava4.1_032718m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-109floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]